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Report for Sequence Feature Glyma02g26780

Feature Type:gene_model
Chromosome:Gm02
Start:27814228
stop:27817369
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g26780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11950AT Annotation by Michelle Graham. TAIR10: TRAF-like superfamily protein | chr3:3783273-3785098 REVERSE LENGTH=572 SoyBaseE_val: 4.00E-146ISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0004659GO-mf Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR10131Panther TNF RECEPTOR ASSOCIATED FACTOR JGI ISS
PF02176PFAM TRAF-type zinc finger JGI ISS
UniRef100_Q9SF04UniRef Annotation by Michelle Graham. Most informative UniRef hit: F26K24.24 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SF04_ARATH SoyBaseE_val: 2.00E-143ISS
UniRef100_UPI0002337128UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337128 related cluster n=1 Tax=unknown RepID=UPI0002337128 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g26780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g26780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g168400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g26780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g26780
>Glyma02g26780.1   sequence type=CDS   gene model=Glyma02g26780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGTTTTACCAAGCATGGAGCTTCCTACAACTGATGTGGACCTTGAGCCTAAGAAGATTGAACCTGAGAAAAACGAAGGTCCCTTGTTCCATTGTGATTTTTGTGATACAGAAGTAGTTCACAAGCTGGCTCAAATGTTCCTGCCAGGACTAGCCTGTGCCTGTGTTGATAACACCACAGGCGGTCCCTTCAAGACCCCTGGTTCAGTGGCTGTTGATCTGAGAAAGGAAATGATAGAATTTGTCACCCAAAAGAGCGAATCGTTTGTTGCTGAGTCTGTTATCTTAGAGGGTGGTCCTGATGGCGGAGCATTGGAACACCCTTTTGATATCATTTGCTATTTTGTTGATGAGTTTGTTAGTTCAAAGAGGAATTTGTTGAGCCAGGTTTCGGGGTGGCTGCTGAGTGATAAGAGAGAGGACAAAATAGACGATTTTGTTCAGGAGATGGAAATGAATGGTTTTTGGCCGCTGGATAGAAGAGAAACACTTGCAAAAACTTTGATCAAGAATGTTGACGTGAAGAGCTCGTTTCATTGCAGCATGAGTTTTAAATCGGCACGAGATCTTGCCAACCATGCTGACGATGGTTGCAACTTCAGGCCTGTGATCTGCCGAAATGAAGGGTGCGACGCCAGATTCAGTGCTGGTCATTTGAAGGAGCATGATTCAGCTTGTGATTTCAAGATAGTTCCATGTGAACAGAAGTGCACAGATAGCATTTTGAGACGCGAGATGGATAGGCACTGCATAACTGTTTGCCCAATGAAGCTTGTGAATTGCCCTTTCTATGCAGTGGGTTGTAGATCTGCTATTGCACAAAGTATGATTAGAAAACATTGTTCAGATGACATCGAGTCTCACCTGTTGCTCATGCTTAAAGGCATCCACCAGGAGGCATCAGGCGAAGATCTAAAACGACGTGTGGAGCAAATTTTACAGGCGTCATCAAGAAGCAAATTAGCAGAGGCTCGGGATGTGAGATCTTATAAAAATATTGTCAAGGACCTTGAAGTTAAGCTAGGGCCTCTTGAAGTGATTGCCAAAGAGAAAACTAGTGCAGAAACTGTTGCCGAGAATGAAGATAGTGAAGACAATAGAACCAAAACAAAAGACAAGGAGCAGCACACACAAACTTTGAATTCATTGGATAAAGCTGAAGTGAGTGCCATCTTGGAAAAGACTTGTGCAGGGAATGCTGTCAATAAAGTGGATAGTGAACATAAGGAAAATGGAAAGCAAGGGTAG
Predicted protein sequences of Glyma02g26780
>Glyma02g26780.1   sequence type=predicted peptide   gene model=Glyma02g26780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVLPSMELPTTDVDLEPKKIEPEKNEGPLFHCDFCDTEVVHKLAQMFLPGLACACVDNTTGGPFKTPGSVAVDLRKEMIEFVTQKSESFVAESVILEGGPDGGALEHPFDIICYFVDEFVSSKRNLLSQVSGWLLSDKREDKIDDFVQEMEMNGFWPLDRRETLAKTLIKNVDVKSSFHCSMSFKSARDLANHADDGCNFRPVICRNEGCDARFSAGHLKEHDSACDFKIVPCEQKCTDSILRREMDRHCITVCPMKLVNCPFYAVGCRSAIAQSMIRKHCSDDIESHLLLMLKGIHQEASGEDLKRRVEQILQASSRSKLAEARDVRSYKNIVKDLEVKLGPLEVIAKEKTSAETVAENEDSEDNRTKTKDKEQHTQTLNSLDKAEVSAILEKTCAGNAVNKVDSEHKENGKQG*






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