Glyma02g26710 - SoyBase

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Report for Sequence Feature Glyma02g26710

Feature Type:	gene_model
Chromosome:	Gm02
Start:	27723432
stop:	27763865
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g26710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11964	AT	Annotation by Michelle Graham. TAIR10: RNA binding;RNA binding \| chr3:3793957-3806626 REVERSE LENGTH=1896	SoyBase	E_val: 0	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1070	KOG	rRNA processing protein Rrp5	JGI		ISS
PTHR23270	Panther	PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5)	JGI		ISS
PF00575	PFAM	S1 RNA binding domain	JGI		ISS
PF05843	PFAM	Suppressor of forked protein (Suf)	JGI		ISS
UniRef100_F4J8K6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein n=1 Tax=Arabidopsis thaliana RepID=F4J8K6_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D7AB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D7AB related cluster n=1 Tax=unknown RepID=UPI000233D7AB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g26710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g26710

Paralog	Evidence	Comments
Glyma09g15786	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g26710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g168900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g26710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g26710

Limit To All Plant Sequences

>Glyma02g26710.1   sequence type=CDS   gene model=Glyma02g26710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCGCATTCTAAAAAACCGCAGAAGAAGAAGAAGAAGAACGACTCTGTAGACAAGCCGAAAATCGATAAAGCCTCTAAGAAAATATTCAAACCAAAGAAGAGGGAACAAAATGACGCCGTCGTCGCAGCTAAGTCCGAAGCACTCTCTCTGCAGCTAGAAGACGAGGTTCCCGATTTTCCTCGAGGCGGAGAATTTTCCGCGAAGGGAAGGAGTGATTACGACGAGTTTAGCGCCGAGGATCCCTCGAGGAAGACGAGGAAGAAGAAGAAGGGGAGAAGTGCGTCGAGTAAGAGTAATGAAGGCGCAGATGACTGGGGCTCGCTTTCTGGCGACGGCATCACCGGAAAATTGCCGCGGCGTGTGAATAGAATTACTCTCAAGAATATAACTCCTGGAATGAAGCTTTGGGGAGTTGTTGCTGAAGTAAATGAGAAAGACCTTGTAGTTAGTTTACCAGGGGGTTTACGTGGTTTAGTTCATGCTTCAGATGCAGTGGATCCTATTTTTGATGACAAAATTGAGGTTGGGGAAATTTTCCTTTCTGGTGTATTTTGTGTTGGGCAGCTGGTTTCTTGTGTTGTACTGAGATTGGATGATGACAAGAAAGAGAAAGGAAGCAGGAAAATTTGGCTTTCTTTGCGTCTTTCTTTGTTACACAAGAACTACAACTTGGATGTTGTTCAGGAAGGCATGGTCCTTGCTGCATATGTGAAGAGTATTGAAGATCATGGTTACATTCTTCATTTTGGTTTACCTTCTTTCTTGGGGTTCTTACCAAAAAACAGCTCTGCAGAAGGTTGGGGTGGTGAAGTAAAAATTGGGAAACTTCTGCAGGGTTTGGTTAGAACCATTGATAAAGTTCGTAAAGTGGTTTACTTGAGTTCTGACCCTGATACAATGTCCAAAAGTGTGACCAAGGATCTTAGAGGTTTATCAATTGATCTTCTAGTTCCAGGAATGCTGGTAAATGCCCGTGTGAAGTCAATCCTTGAGAATGGTGTTATGTTATCATTTCTCACATACTTCACTGGAACTGTTGATCTGTTTCATTTGCAAAATATTTATCCTGGAACAAACTGGAAGGATAAGTGCAGTGAATCTCAGAAGGTTGTTTCTCGGATATTATTCATTGATCCATCAAGTAGAGCTGTTGGGTTGACGCTGAATCCACATCTTGTTCAGAACAGGGCCCCCCCTTCTCATGTTAAAATTGGAGATATATATGACAACTCAAAAGTTGTTAGGGTGGATAGAGGATTAGGACTATTGCTTGAAGTTCCATCAATTCCGGAGCCAACTCCAGCTTTTGTCAGTATATCTGATATTGCTGAAGAGGAGGTCCAAAAACTTGAGAAGAAGTACAAGGAAGGAAATCGTGTTCGAGTTCGGATTCTTGGGTTACGATATTTGGAAGGAATTGCTACAGGAGTTTTGAAGGCTAGTGCTTTAGAAGAGGAAGTGTTTACTCATTCTGATGTCAAGCCTGGCATGGTGGTGAAGGCTAAGATTCTTTCAGTTGACAGCTTTGGTGCTATAGTGCAAATTCCAGGTGGTGTGAAGGCACTTTGTCCTCTTCGACATATGTCTGAATTGGAAATTTCAAAGCCTGGAAAAAAATTTAAGGTGGGAGCTGAATTGGTTTTCCGTGTGCTTGGTTGCAAGTCAAAAAGAGTGACAGTTACACACAAGAAAACGCTTGTGAAATCAAAACTTGGGATTATTAGTTCATATGCTGATGCAACTGATGGTTTGATAACCCATGGATGGATAACAAAGATTGAAGTTCATGGATGCTTTGTACGGTTTTACAATGGGGTCCAAGGATTTGCTCCCAGATCTGAGCTTGGATTAGAGCCAGGGGCTGATCCAGGTACAGTGTACAATGTTGGACAAGTTGTCAAATGCCGGGTCATAAGTTGCATTCCTGCTTCACGAAGAATCAATCTTAGTTTCATAATAAAGCCCACAAGGGTTTCTGAAGATGATATGGTTACGCTGGGTAGCCTTGTTTCAGGAGTTGTTGACAGAATAACATCTAATGCTGTAGTTGTTTATGTCAATGCAAGTGGTTTCTCAAGGGGTACAATATCTATGGAGCACTTGGCAGATCATCATGGGCAAGCTATTTTGATGCACTCAAGATTGAAACCTGGATATAATTTTGACCAACTGCTGGTTCTAGATGTTAAGGGAAACAATTTGATCCTGTCTGCCAAAAGTTCTCTTATTAAACATGCTCAGCAGATTCCTGCAGATATCAATCAGATACATCCTAACTCCGTTGTGCATGGCTATATATGTAACTTAATTGAGTCTGGTTGCTTTGTTCGTTTCCTTGGTCATTTAACTGGCTTTGCTCCTAGAAATAAGGCTGCAGATGACCAGAAAAGCAATATTTTGGAAGCTTATTACATTGGACAATCAGTTCGCAGCAACATATCCAATGTTAGTAGTGAAACTGGTAGAGTAACACTCTCGCTAAAGCAGACTGCTTGTTCTTCAACTGATGCATCATTTATTCAGGACTACTTTCTCATGGATGACAAGATTGCAAAGTTGCAATACTGGGGATCTGGTGCATCTGATTCAAAGTGGGATGAAGGATTTAACATTGGTATGGTTGCAAAAGGGAAAGTTAAGGATGTTGAGGATGTTGGACTTGCTATAAGTTTTGAAAAGCATAATGATGTTTTTGGTTTTATTGCCAATTATCAGTTGGCTGGAACTATTTTGGAGAGTGGCTCTGTAGTGGAAGCATTGGTTCTTGATGTTGCAAAGGCAGACAAGCTTGTTGAGTTAACTCTAAAACCAGAGTTCATTAATAGATCTAAAGAAAGTTCCACAAGTCATACCAACAAGAAGAAACGTCGAAGAGAGGCATCGAAGGACTTGGTATTGCATCAGACTGTGAATGCAGTAGTGGAAATTGTAAAAGAAAATTACCTGGTTCTATCAATTCCAGAAAATGATTACACTATAGGATATGCATCAGTATCGGACTATAATGCTCAAAGGTTTCCTCATAAACAATACCAAAATGGGCAGAGTGTTGTTGCAACTGTTATGGCTCTTCCAAGTCCTGAAACATCAGGAAGGTTGCTCTTACTTCCCAATGAGGTCAATGGGACATCTAGTTCTAAAAGAACCAAGAAGAAGTCTAGCTACAAAGTGGGAACTCTGGTTGAGGCAGAGATTACTGACATCAAAACGCTTGAACTGAAGTTGAAGTTTGGATTTGGTCTACATGGCCGGATTCACATAACAGAGGTACAGAATGGAAGTGTTTTGGAAAATCCATTCTCTTGTTACAAAGTTGGGCAAACAGTGACAGCAAGGATTGTTGCAAAACCTAATGAGTCAGATGGCAATCGGAAGGGCTCACAGTGGGAGCTATCAGTCAGATCTGAAATGGTTACAGGTTCCAGTGATATAGATGATGTATCTGAAAATCTTGAGTTTAAAATTGGGCAATGCGTGGCTGGTTATGTATATAAAGTAGAAAGTGAATGGATCTGGTTAACAATATCGCGAAATGTAAGGGCTCAGCTATATATTCTTGATAGTGCTATTGAACCCAGTGAGCTTGAGGATTTCCAGAATCGATATCATGTTGGACAACCTGTTTCTGGCCATGTTCTAAGTGTCAACATGGAGAAGAAGCTATTACGGTTGGTTGTGCGCCCCTTTTCTACTCTTCCTTGCGGAACTAGTGAAGAGCCACACATTAATGTTGTGGATAAGGGTTTAACAGCACATTTTCATGAAGGAGATATTTTAGGTGGAAGGGTTAGTAAAATACTTCCAAGTGTTGGTGGATTGCTTGTCCAAGTTGGTCCTCGCACATATGGAAAAGTACATTTTACTGAACTTGCAGACACATTGGTGCCTGATCCGTTGTCTGGATATCATGAAGGGCAGTTTGTCAAATGTGTAGTGCTTGAAGTCAGCCACACTGTCAAGGGTACTATTCATGTTGACTTGTCATTGCGATCTTCCAATGTGAAGCTTTCCCAGGATTCTGCCGTGAATGCTAACAGCAAATGTGTGGAGAAGATTGAGGATCTTCATCCTGATATGATTGTAAAGGGTTATATTAAGAATGTCACACCAAAAGGTTGCTTCATTATGCTGTCACGAAAGATTGATGCCAAAATTCTTCTGTCCAATCTTTCCGAACAATATGTTCAAGAACTTGAGAAAGAATTTCCTATTGGAAAACTTGTCATTGGCAGGGTTATATCTGTGGAGCCTCTCTCAAATCGTGTTGAAGTTACACTGAAGACGTCAACGGATCCCAATATACCCAAATCTGAGATTATTGATTTAAGTAAATTTCACGTTGGAGATGTTATATCTGGCCGGATTAAGCGGGTTGAGTCATTTGGTTTATTCATTGCAATTGACAACACAAACATGGTTGGGTTATGCCATGTATCAGAAATTTCTGATAACCGTATTGAGAACATTGAAGCAAACTATAGAGCTGGAGAGAGAGTAAATGCAAGAATATTAAAGGTGGATGAAGAAAGACACAGAATTTCTTTGGGAATGAAGAATTCATATATGAGGGATGAAACCATGCTTCAAATACCATCTGAGGAAGAATCAGATGAACCTATCACAGATGGAATGAAGTCTATAACTTCTATGAATAGTAGTTTGCTTGGAACCTCAAATATAGATGTTGAGGATGAAATTAATCAATTCCCAATTCTTTCACAAGTACAACAAAGGGCAGACATTCCACCACTTGATGTTCCCCTTGATGACTTTGATCAATTTGATGTAAATAACACTAACAGTCAAAGTGAAGAACATGCAAATGAAGAAGACATTGTAAATGAAAAACATAAGAGACGTGAAAAGAAGAAAGCAAAGGAGGAGAGGGAGAAGCAAATAAGGGCTGCTGAGGAAAGATTACTGGAGGATGATGTCCCTAGAACTGCTGATGAGTTTGAAAAGCTGATTAGAAGCTCTCCTAATAGCAGTTTCACCTGGATAAAATATATGGATTTCATGGTTTCTATGGTTGATGTTGAGAAAGCCCGCTCAATTGCCGAAAGGGCTTTGAGGACAATAAATATCCGAGAAGAGAATGAGAAGCTTAACATCTGGAAGGCCTACTTTAATTTGGAAAATAAGTATGGAAACCCTAGAGAGGAGGCTGTTATGAAAGTATTCCAAAGAGCTCTACAGTACAATGATCCCAAAAAGGTCTACCTAGCACTCTTGGGAATGTATGAGAGGACTGAACAGCATAATTTAGCCGATGAACTTCTCAATAAAATGACAAAGAAGTTCAAGCATTCATGCAAAGTTTGGTTGAGGCGTATACAAAGTCTTTTGAAGCAAAACCAGGATGGAATCCAACCTGTCATTGATCGAGCTTCGTTAAGCCTTCCCAAACACAAGCATATTAAATTTTTCTCTCAGACAGCTATTCTTGAATTCAAAGTTGGGGTTCTAGATCGAGGGCGATCCATGTTTGAAAAAATCCTACGGGAGTACCCAAAGAGAACAGACTTATGGAGTGTTTATCTTGATCAAGAAATTCAACATAAAGACAAAGATATAATTCGTGCACTGTTTGAAAGGGCTGTTAGTCTGAGCCTCCCACCGAAAAAGATGAAGTTCTTATTCAAAAAGTATCTTTATTATGAGAAGTCCCAAGGTGATGAAGAACGGATTGAATCTGTGAAGAGGAAAGCAATGGAATATGTCGAGAGTACTAGGGCTTGA

Predicted protein sequences of Glyma02g26710

Limit To All Plant Sequences

>Glyma02g26710.1   sequence type=predicted peptide   gene model=Glyma02g26710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPHSKKPQKKKKKNDSVDKPKIDKASKKIFKPKKREQNDAVVAAKSEALSLQLEDEVPDFPRGGEFSAKGRSDYDEFSAEDPSRKTRKKKKGRSASSKSNEGADDWGSLSGDGITGKLPRRVNRITLKNITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIEVGEIFLSGVFCVGQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVLAAYVKSIEDHGYILHFGLPSFLGFLPKNSSAEGWGGEVKIGKLLQGLVRTIDKVRKVVYLSSDPDTMSKSVTKDLRGLSIDLLVPGMLVNARVKSILENGVMLSFLTYFTGTVDLFHLQNIYPGTNWKDKCSESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKVVRVDRGLGLLLEVPSIPEPTPAFVSISDIAEEEVQKLEKKYKEGNRVRVRILGLRYLEGIATGVLKASALEEEVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAELVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYNGVQGFAPRSELGLEPGADPGTVYNVGQVVKCRVISCIPASRRINLSFIIKPTRVSEDDMVTLGSLVSGVVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHSRLKPGYNFDQLLVLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESGCFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDSKWDEGFNIGMVAKGKVKDVEDVGLAISFEKHNDVFGFIANYQLAGTILESGSVVEALVLDVAKADKLVELTLKPEFINRSKESSTSHTNKKKRRREASKDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQNGQSVVATVMALPSPETSGRLLLLPNEVNGTSSSKRTKKKSSYKVGTLVEAEITDIKTLELKLKFGFGLHGRIHITEVQNGSVLENPFSCYKVGQTVTARIVAKPNESDGNRKGSQWELSVRSEMVTGSSDIDDVSENLEFKIGQCVAGYVYKVESEWIWLTISRNVRAQLYILDSAIEPSELEDFQNRYHVGQPVSGHVLSVNMEKKLLRLVVRPFSTLPCGTSEEPHINVVDKGLTAHFHEGDILGGRVSKILPSVGGLLVQVGPRTYGKVHFTELADTLVPDPLSGYHEGQFVKCVVLEVSHTVKGTIHVDLSLRSSNVKLSQDSAVNANSKCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGDVISGRIKRVESFGLFIAIDNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEERHRISLGMKNSYMRDETMLQIPSEEESDEPITDGMKSITSMNSSLLGTSNIDVEDEINQFPILSQVQQRADIPPLDVPLDDFDQFDVNNTNSQSEEHANEEDIVNEKHKRREKKKAKEEREKQIRAAEERLLEDDVPRTADEFEKLIRSSPNSSFTWIKYMDFMVSMVDVEKARSIAERALRTINIREENEKLNIWKAYFNLENKYGNPREEAVMKVFQRALQYNDPKKVYLALLGMYERTEQHNLADELLNKMTKKFKHSCKVWLRRIQSLLKQNQDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKVGVLDRGRSMFEKILREYPKRTDLWSVYLDQEIQHKDKDIIRALFERAVSLSLPPKKMKFLFKKYLYYEKSQGDEERIESVKRKAMEYVESTRA*

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