Report for Sequence Feature Glyma02g26390
Feature Type: gene_model
Chromosome: Gm02
Start: 27243457
stop: 27250179
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g26390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G44170 AT
Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 3H1 | chr1:16796564-16800031 REVERSE LENGTH=484
SoyBase E_val: 0 ISS
GO:0006081 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular aldehyde metabolic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009269 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to desiccation
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0004028 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity
SoyBase N/A ISS
GO:0004029 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity
SoyBase N/A ISS
KOG2456
KOG
Aldehyde dehydrogenase
JGI ISS
PTHR11699 Panther
ALDEHYDE DEHYDROGENASE-RELATED
JGI ISS
PTHR11699:SF15 Panther
1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE
JGI ISS
PF00171 PFAM
Aldehyde dehydrogenase family
JGI ISS
UniRef100_I1JFT5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Aldehyde dehydrogenase n=1 Tax=Glycine max RepID=I1JFT5_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1JFT5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase n=1 Tax=Glycine max RepID=I1JFT5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g26390
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g26390
Paralog Evidence Comments
Glyma14g24140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g26390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g030400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g26390
Coding sequences of Glyma02g26390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g26390.1 sequence type=CDS gene model=Glyma02g26390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGTCGACGCCGCAGGACTCTGTCAAAACGACGGCGTCGGCGAAGAACACCGCGTTCGACGCGGAAGCGGCGTCGCGGCTCGTGAATGAGCTTAGGCGAAACTTCGCTTCGAACAAAACGCGCAGTTACGAGTGGAGACTGTCGCAGCTCAACGCGCTCGAGAAACTCGTCGTCGTTCACGAGCAGGAGATCGTCGACGCGCTCCGAAACGACCTCGGCAAGCCGCCACTCGAAACCGTTGCATACGAGATTGCTATGTTGAAAAACTCATGTAGAATCGCACTCAAGGAATTGAAACATTGGATGACTCCTGAAAAGGTCAAAACTTCAATCGCAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAACCACTGGGGGTTGTGTTAGTCATCTCTGCATGGAACTACCCATTCTTGTTGTCACTTGATCCAGTCGTTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAAGCTTATCGGAGACTACTTGGATAACTCATGTATTAGAGTTGTTGAGGGAGCAGTTGATGAAACATCTGCATTACTGCAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGACGAGTGGCACGCATTGTGATGGCTGCTGCTTCAAAACACCTAACACCAGTTGTGCTGGAGCTTGGAGGAAAATCTCCAGTTGTTGTTGATTCAAATATCAATTTAAAGGTAGCAACAAGACGAATAATTGCAGGAAAGTGGGGTTCTAATAATGGGCAAGCCTGCATTTCTCCAGATTATATTATAACAACTAAAGACTATGCTCCCAAGTTGGTGGATGCGCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTGTTGTGAACTCCAACCACTTTAATCGGTTGACAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTTATGGAGGCCAAAAGGATGAAAACAAATTGAAGATTAGCCCCACTGTTCTATTGGATGTCCCACGGGACTCTTTGATTATGAATGAGGAGATATTTGGTCCTTTACTTCCCATCCTCACGGTTGACAAACTAGAAGAAAGCTTTGACGTGATCAATTCAGGACCCAAGCCTCTCGCTGCATATATATTTACAAATAACAAGAAGCTCAAGGAGCAATTTGTTATGACTATTTCAGCTGGTGGTTTGGTTGTTAATGACACTACTTTACATCTTGCAGTTCATACTTTACCATTTGGTGGAGTTGGTGAGAGTGGAGTGGGTGCATACCATGGGAAATTCTCATTTGAAGCTTTTAGCCACAAAAAAGCTGTTCTCTATCGCAAATTTATTGGTGATGCTCCAGTAAGGTACCCACCATACACAAATACAAAGATGAGATTGCTGAAAGCTATCATAGGTGGTGGCATACATGGTATTGTTCGTGCCCTGTTTGGTTGGTGA
Predicted protein sequences of Glyma02g26390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g26390.1 sequence type=predicted peptide gene model=Glyma02g26390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSTPQDSVKTTASAKNTAFDAEAASRLVNELRRNFASNKTRSYEWRLSQLNALEKLVVVHEQEIVDALRNDLGKPPLETVAYEIAMLKNSCRIALKELKHWMTPEKVKTSIATFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPATSSLLAKLIGDYLDNSCIRVVEGAVDETSALLQQKWDKIFYTGNGRVARIVMAAASKHLTPVVLELGGKSPVVVDSNINLKVATRRIIAGKWGSNNGQACISPDYIITTKDYAPKLVDALKTELEKFYGKNPLESKDLSRVVNSNHFNRLTKLLDDDKVSGKIVYGGQKDENKLKISPTVLLDVPRDSLIMNEEIFGPLLPILTVDKLEESFDVINSGPKPLAAYIFTNNKKLKEQFVMTISAGGLVVNDTTLHLAVHTLPFGGVGESGVGAYHGKFSFEAFSHKKAVLYRKFIGDAPVRYPPYTNTKMRLLKAIIGGGIHGIVRALFGW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
