Glyma02g25930 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g25930

Feature Type:	gene_model
Chromosome:	Gm02
Start:	26764778
stop:	26771668
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g25930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22380	AT	Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 85A3 \| chr1:7900522-7902332 REVERSE LENGTH=488	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0015020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_G7IEP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin-O-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7IEP9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JFT2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFT2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g25930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g25930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g029900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g25930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g25930

Limit To All Plant Sequences

>Glyma02g25930.1   sequence type=CDS   gene model=Glyma02g25930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCACCACTTCATATCCAAAAGCCTCATGTTGTATGTGTACCATTCCCAGCACAAGGCCATGTAAACCCCTTTATGCAACTAGCCAAACTCCTTCATTGTGTGGGTTTCCACATAACCTTTGTGAACACTGAGTTCAACCACAACCGTTTTGTTAAGTCCCATGGACCAGACTTTGTTAAGGGTCTCCCTGATTTCAAATTTGAGACCATACCCGATGGCTTGCCGCCTTCGGATAAGGATGCAACTCAGGATGTTCCAGCACTGTGCGATTCTACTAGGAAAACTTGTTATGGTCCATTGAAAGAGTTGGTGATGAAGTTGAACTCTTCTTCCCCTGAAATGCCTCCGGTTAGTTGCATCATTGCTGATGGGACTATGGGATTTGCTGGAAGAGTCGCAAGGGATTTGGGCATACAAGAGGTTCAACTTTGGACAGCCTCAGCGTGTGGTTTTGTGGGATATTTGCAATTCGAGGAACTGGTGAAAAGAGGCATTCTTCCATTCAAAGATGAAAATTTTGCTATTGATGGCACCTTGGATAAGAGTTTAAATTGGATTTCTGAAATGAAGGATATTAGACTCAAAGACCTTCCAAGTTTTATCAGAACGACCACTTTGGATGATACTATGTTTGATTTCTTGGGTTCTGAGGCACGAAACACTTTGAGATCATCTTCAATCATCATTAACACATTCCAAGACTTGGATGGAGAAGCCATTGATGTCCTTAGGATCAAGAACCCTAACATATATAACATTGGCCCACTTCACTTGATTGATAGGCATTTTCTTGAGAAAGAAAAGGGCTTCAAGGCCAGTGGATCAAGTTTATGGAAAAATGATTCAAAATGCTTAGCATGGCTAGACAAATGGGAACCTAACTCAGTCATATATGTTAATTATGGAAGTATAACGGTGATGACAGAGCATCACTTGAAAGAATTTGCTTGGGGACTAGCAAATAGCAAGCAACATTTCTTATGGATAATGAGACCAGATGTAGTAATGGGTGAATCTATATCTTTGCCACAAGAGTTCTTTGATGAGATCAAGGACAGGGGATATATAACAAGTTGGTGTGTTCAAGAGAAAGTGCTTTCTCATCCATCAGTTGGGGCCTTTCTAACCCATTGTGGTTGGAATTCTACACTTGAAAGTATATCTGCAGGTGTGCCTATGATTTGTTGGCCTTTCTTTGCCGAGCAACAAACAAATTGCAAGTATGTATGCACAACTTGGGGAATCGGAATGGAAATTAACCATGATGTTAGGAGAGAAGAGATAGCAAAGCTTGTGAAGGAAATGATGATGGGAGAAAAGGGAATGGAAATGAGACAAAAATCCTTAGAGTGGAAGAAGAAAGCAATAAGAGCTACTGATGTTGGAGGATCATCTTACAATGATTTCTATAAGTTAATAAAGGAGGTTTTTCATTACAGTGTTCTTTAA

Predicted protein sequences of Glyma02g25930

Limit To All Plant Sequences

>Glyma02g25930.1   sequence type=predicted peptide   gene model=Glyma02g25930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSPLHIQKPHVVCVPFPAQGHVNPFMQLAKLLHCVGFHITFVNTEFNHNRFVKSHGPDFVKGLPDFKFETIPDGLPPSDKDATQDVPALCDSTRKTCYGPLKELVMKLNSSSPEMPPVSCIIADGTMGFAGRVARDLGIQEVQLWTASACGFVGYLQFEELVKRGILPFKDENFAIDGTLDKSLNWISEMKDIRLKDLPSFIRTTTLDDTMFDFLGSEARNTLRSSSIIINTFQDLDGEAIDVLRIKNPNIYNIGPLHLIDRHFLEKEKGFKASGSSLWKNDSKCLAWLDKWEPNSVIYVNYGSITVMTEHHLKEFAWGLANSKQHFLWIMRPDVVMGESISLPQEFFDEIKDRGYITSWCVQEKVLSHPSVGAFLTHCGWNSTLESISAGVPMICWPFFAEQQTNCKYVCTTWGIGMEINHDVRREEIAKLVKEMMMGEKGMEMRQKSLEWKKKAIRATDVGGSSYNDFYKLIKEVFHYSVL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain