SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02970 | AT | Annotation by Michelle Graham. TAIR10: GDA1/CD39 nucleoside phosphatase family protein | chr2:865395-868007 REVERSE LENGTH=555 | SoyBase | E_val: 8.00E-94 | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1386 | KOG | Nucleoside phosphatase | JGI | ISS | |
| PTHR11782 | Panther | ADENOSINE/GUANOSINE DIPHOSPHATASE | JGI | ISS | |
| PTHR11782:SF17 | Panther | JGI | ISS | ||
| PF01150 | PFAM | GDA1/CD39 (nucleoside phosphatase) family | JGI | ISS | |
| UniRef100_B9S6M2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenosine diphosphatase, putative n=1 Tax=Ricinus communis RepID=B9S6M2_RICCO | SoyBase | E_val: 3.00E-113 | ISS |
| UniRef100_I1JFT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JFT1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g25772 not represented in the dataset |
Glyma02g25772 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g029700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g25772.1 sequence type=CDS gene model=Glyma02g25772 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTCCCAAAAAGCCCTCAACCCAGACCCTCATCTCCTTCCTCTTCCTACATTCCACCCCACCGTACCCAACTGCACCCTCGCATGATCTCTCTCTATTCTTCTTCTTCCCCAAATCCAAATCCCAACAACAAACCCCACACCACCAGATGCCTCTTGTTTTTCTTCGCCCTCCTCTTCTTCACCGCCCCCTTCCTCTTCTACCTCTTCTCCACCGCCCTCCAAATCCACTCCTCCCCAAAATTCGCCGACTCCCGCCCCGCCTCCTTCGCCCTCGCCCTCCGCGCCGGCCCCCACGCCCTCCGCCTCTCTGTCTTCCACTTCCTCGGCCCCGCCCGTGCCCTCCTCGCCGCCGCTCACTCCGCCGCCGCCTCCCCCGGCTTCGACGCCGGCCCTGACGCCCTCCGCGGCACCGTTGCGGAGCTCATCAAGTTTGCCAAGGGGAGGGTGCCCAGGAGGGAATGGGGCAACACCGTGGTGCGGCTGGACGCCACTGAGGAGGTTGAGGGGCTGGGCGTCAAGGAAGCGGAGAAGGTTCTGGAATGTTTCAGACAGGCTTTGAGGGTGTCCGGGTTCTTGTTCAAGGATGAATGGGCACGAGTAATTTCGGGGGAAGAACAAGGCATCTCTTCTTGGGTTGCTGTAAATTATGCTCTTGGAAACTTGGGACGAGAGGCTCAAGAAACAACTGGAATAGTTGAACTTGGTGGGGCTTCTTTGCAGGTTACATCAGCTAAACTTAATGCAGATTTAGCTCAGTCTTTGCGAACTATAAGATTGTCTGGGGTTACGTACAACCTTTACACTCAGAGTTGGCCCCAACTGGGTCAGGATGTGGTATGGAAATCATTAGAGGAGGGACTGAAATATAGAGAGTTGAAGCTTTCTTCAAAATCTAGCAAAAGAAATATAATTAATCCTTGCATTCCTAGAGGGTATGAGTATCCTCAGATCACCAATGCAAGTGATGTAAAACACCCAATCTTCCAACCAGCTGGAAATTTCTCAGCATGCAGGTCCAAAGCTGTGTCATTGTTAAAGAGAACAGAAGATAGATGCCTGCATCCACCTTGTAAAATTACTTCTTCCTTTTATGAGTTATTAGGTGAACAAGTTTCAAAAAGCTTCTTGTATACTTCTGAGATTCTTAGGATGGCTCCTAGGACTTCTTTGTTTCAATTGGAGGCAGAGGGCCGACATTATTGTGAAGATCATTGGGATGCTCTTAAAGATCTGCATAATGAAGTTGATTATATGGATTTATTGAAGTATTGTTTCTCTTCTGCGTATATGCTGGCATTATTGCATGATGTTCTTGGGATTGCTATGGAAGAGAAAAGGGTTGGATTTGGGAACCGGAAGATTAACAGTGATGTTGATTGGACACTTGGATCTTTCATAACTGAAACAATGGCAGAACCCCTTGAATTGGAACATTTAGATACAGGGATGATTGTTGGGAATGAATCAGTCACATATTTTTCATTATTTGCATTTCTTTTCTTATTCATGCTTGCTGCATTCTTTGTACTGCAATGGAGAAAGCCACAATTGAAGACAGTATATGACCTTGAGAAGGGACGCTATATTGTTACACGTATACCCAGGTGA
>Glyma02g25772.1 sequence type=predicted peptide gene model=Glyma02g25772 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNFPKSPQPRPSSPSSSYIPPHRTQLHPRMISLYSSSSPNPNPNNKPHTTRCLLFFFALLFFTAPFLFYLFSTALQIHSSPKFADSRPASFALALRAGPHALRLSVFHFLGPARALLAAAHSAAASPGFDAGPDALRGTVAELIKFAKGRVPRREWGNTVVRLDATEEVEGLGVKEAEKVLECFRQALRVSGFLFKDEWARVISGEEQGISSWVAVNYALGNLGREAQETTGIVELGGASLQVTSAKLNADLAQSLRTIRLSGVTYNLYTQSWPQLGQDVVWKSLEEGLKYRELKLSSKSSKRNIINPCIPRGYEYPQITNASDVKHPIFQPAGNFSACRSKAVSLLKRTEDRCLHPPCKITSSFYELLGEQVSKSFLYTSEILRMAPRTSLFQLEAEGRHYCEDHWDALKDLHNEVDYMDLLKYCFSSAYMLALLHDVLGIAMEEKRVGFGNRKINSDVDWTLGSFITETMAEPLELEHLDTGMIVGNESVTYFSLFAFLFLFMLAAFFVLQWRKPQLKTVYDLEKGRYIVTRIPR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
