Glyma02g25274 - SoyBase

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Report for Sequence Feature Glyma02g25274

Feature Type:	gene_model
Chromosome:	Gm02
Start:	26023827
stop:	26025932
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g25274

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15700	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:5321136-5322376 REVERSE LENGTH=375	SoyBase	E_val: 2.00E-14	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_G7K8F2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cc-nbs-lrr resistance protein n=1 Tax=Medicago truncatula RepID=G7K8F2_MEDTR	SoyBase	E_val: 7.00E-26	ISS
UniRef100_I1JFS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JFS7_SOYBN	SoyBase	E_val: 5.00E-109	ISS

Expression Patterns of Glyma02g25274

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g25274 not represented in the dataset	Glyma02g25274 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g25274 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g312600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g25274

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g25274

Limit To All Plant Sequences

>Glyma02g25274.1   sequence type=CDS   gene model=Glyma02g25274   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACAGGAAGAGAGGGTAGAAGAAAGCCAGTGTTGTTCGAACTTGACATTTAACTATTCTCTAGCTAAAGATGTGATATGCATAGCCCAACAAATGAATGTGCTCAACAACAACAACAAATTCAAGCCATTTTCACACCCCATTCAACTCTCAAGCATGAATTACTTCTTTCTCAAAGACTTTTTGGCATTGGATTCTAAGAAACCAGTTTATGAAGAGTTGAAGGCAATCCAAGATCAGATCGAGAAGATTCTCATCATCTTGGATGGTGTATGGGAGAAGTTGGACTTGGAAGCTATAGGGATTCCATTAAATGAGAACGACAAGAGATATTGTATCCTCCTCACTACGTGCAACCAAGCAATTTGCACTTCAATGAACTGCCAAAGCATGATTGAACTGTCTATGCTAAATGAAGATGAAGGGTGGACTTTGTTCAAGCAACGTGCACAAATAGATGATGATTCTCTAGAAGACTTGAGAGAGGTGGCAAAGAGAGTCTTTGACAAATGTAAAGGACTGCTTGTTGCCATTGTGACAGTGGCAAGAACTTTAAAGGAGAAGACTTGTACCAGTTGGGAATTGACATTTTTAAGACTAGAAACTTCTGAATCAATTGATGTTCAAGAGGGCTTGACAAGAAGCATTAACATCGAGAATTGCAGCAAATTGAAAACATTCTTCTCTGCGACTACTGTTACAAGTCTACCAAAGTTGCAACAACTAGTTGTAAAGGACTGCAACAAATGGGAGGAAATAATTTTTCTAGATTCAGATCAAGCAGGACAATTTAGAAACCTATATCCTCTTAGCAATCCAGACTGTTTTGCCAAACCGAGAAGCGTTCAAATTGAAAGATGCAACTCATTGAAAACAATCTTTATCACGACAATTGTTACAAGCCTACCAGAGTTGCTTGTAAAGGACTGCGACAAATGGATGGAAATAATTTCTTTAGATTTAGTGGAAGCAAGACAAGTTGGAAACCAGTCTGCATCTTCCAAACAAATTTGTTTCCCCAAACTGCAGAGGATTCAAATTGAAAGTTGCAAAAAGTTGAAAACAATCTTGTTTGCAACCATTGCTACAAGCCTTCCAGAGTTGGAAAAAATAGTTGTAAAGAACCGCAATGATTGGGAGGGCATAGTTTATTTAGATTCAGAGGAAGCAAGAAAACATAGAAACCTTACTGTTGCTTCCCAAGAAGTTTGTTTCCCCAAATTGAAGAAGATTGAGATAAAAAAATGTAACAAATTGAAAGCAATCTTCTCGAAAACCATTGTCACAAGCCCACCAAAGTTGGAGGAATTGGCCGTAAAGGATTGCCATAAATTGGAGGAAATAATTTCCTTGGATTCAGAGGAAGCAAGACAACTGAGAGATATATGCTCCTTCCCAACAAATTTGTTTCCCTATGGTTTGGAGTATTGA

Predicted protein sequences of Glyma02g25274

Limit To All Plant Sequences

>Glyma02g25274.1   sequence type=predicted peptide   gene model=Glyma02g25274   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQEERVEESQCCSNLTFNYSLAKDVICIAQQMNVLNNNNKFKPFSHPIQLSSMNYFFLKDFLALDSKKPVYEELKAIQDQIEKILIILDGVWEKLDLEAIGIPLNENDKRYCILLTTCNQAICTSMNCQSMIELSMLNEDEGWTLFKQRAQIDDDSLEDLREVAKRVFDKCKGLLVAIVTVARTLKEKTCTSWELTFLRLETSESIDVQEGLTRSINIENCSKLKTFFSATTVTSLPKLQQLVVKDCNKWEEIIFLDSDQAGQFRNLYPLSNPDCFAKPRSVQIERCNSLKTIFITTIVTSLPELLVKDCDKWMEIISLDLVEARQVGNQSASSKQICFPKLQRIQIESCKKLKTILFATIATSLPELEKIVVKNRNDWEGIVYLDSEEARKHRNLTVASQEVCFPKLKKIEIKKCNKLKAIFSKTIVTSPPKLEELAVKDCHKLEEIISLDSEEARQLRDICSFPTNLFPYGLEY*

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