SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27060 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr4:13581581-13585070 REVERSE LENGTH=864 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0010031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circumnutation | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0010005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule, transverse to long axis | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| PF02985 | PFAM | HEAT repeat | JGI | ISS | |
| UniRef100_G7J1D6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein TORTIFOLIA1 n=1 Tax=Medicago truncatula RepID=G7J1D6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F430 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F430 related cluster n=1 Tax=unknown RepID=UPI000233F430 | SoyBase | E_val: 0 | ISS |
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Glyma02g25230 not represented in the dataset |
Glyma02g25230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g11930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g313200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g25230.1 sequence type=CDS gene model=Glyma02g25230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCACCCAAAACCCCAAACCCAATCAACCCCAACACCATCACCTTCTTCAAGATCTTCTTCTCTCTCGTCCCACCTCGCTATGGTGGAGCTGAAGCAGAAGATCTTAACCTCTCTTTCGAAGCTCTCCGACCGCGACACGCACCAGATCGCGGTGGAGGACTTGGAGAAGACTATCTCGGGGCTCTCGCCGGACGCCATTCCGATGATTCTTAACTGTCTTTACGACGCCGCCACCGACCCCAAGCCCGCCGTCAAGCGGGACGCGCTCCGCCTCCTCGCCGCCGTCTGCGCCGCGCACTCCGACGCCGCGGCGGCCCACCTCACAAAGATCATCGCCCACGTCGTCCGCCGCCTCAAGGACGCCGACTCCGCCGTCCGCGACGCCTGCCGTGACACCGTGGGCGCCCTCGCCGCGCAGTATTTGAAGGGAGACGGCGGAGGGGGTGGCGGGGGAGGTGTAGGGACGGTGGTGGGGCTGTTCGTGAAGCCGCTGTTCGAGGCAATGGGGGAGCAGAACAAGGGGGTGCAGGCGGGGGCGGCGGTGTGCATGGCCAAGATGGTGGAGTGTGGCGGTGGCGGCGGAGGAGGGGAGGCGGTGCCGGTGGCGGCGTTTCAGAAGCTGTGTCCGAGGATCTGCAAACTGCTCAACAGTCCCAATTTCATGGCCAAGGCGGCGATTTTGCCGGTGGGTTGCCAGCTTGGTCACAGGGTTGGAGCGGTTGCACCACAAAGCTTGGAACATTTGCTGCCTAGCATTCATGAATGCCTTTCTAGTACTGATTGGGCAACACGTAAAGCAGCAGCTGAGGCATTAAGTTCTCTGGCATTGCATTCAAGCAATTTGGTTACCAATAGAGCGGAACCCACACTGGCAGTTCTTGAGGCTTGCCGATTTGACAAGATAAAGCCTGTAAGAGATAGCATCAATGAAGCATTGCAATTGTGGAAAAAGATTGCAGGGAAAGGAGATGGGTCTCCTAATGATTCAAAGCCCTCATCTGATGGTGGTAATGAATCAGCTATTTCGTCAGAAGCAAGTGACCCGAAAAAAGTAAATCTTGATGAGAGGAAGACTGATTCACCAGTAAAGGATTCATCAAATATTTCTTCAAATATGGATTCAACCAAGGCCAAAGCAGCTGGCATCTCAGAGAAGGCAGTTGTAATACTGAAAAAGAAACCACCTGTATTATCTGATAAAGAACTAAATCCAGAATTTTTCCAAAAACTTGAAAGAAGGGGTTCGGATGATTTACCAGTGGAAGTAGTTGTTCCTCGTAGAGGCCTCAATTCTTTGAACTCCAACAATGAGGAAGAATCAGAGGCAAATGCTAAAGATTCGAAAGAAAGAATAAATTCTGTTGGAAACATCCCTAATGATGATTTTCATGGATCCTCTAGTAATAAATATCGTATCTTTGAGAGAGGCAATGATGGAAATTCAAAACAAAGGAATTATGATGATTTTGGCCATGACAGATTCTCTGAAAGGAGAGTGAACTCAAAAGAACTGAGGACAAAAGCATATGATACTGATGATAGGACTGAAAATGATCAGAGGGAGGGTTCTGCCAATGTTTCAGGTTTTTCTAAAATTGATGGTCAATCAGAAGTACCCTTCTCCAATAACAGAGGAAACTGGTTGGCCATCCAGAGGCAGTTGCTGCAACTGGAAAGGCAACAAGTTCATCTGATGAATATGCTGCAGGATTTCATGGGCGGATCTCATGATAGCATGGTGACTCTAGAGAACAGAGTGCGAGGTCTTGAGAGAATTGTTGAAGACATGTCACGAGATTTATCCATATCATCAGGTCGTAGAAACTTTGCAGGATTTGAAGGATCATCTAATAGGCCTTCTAGCAAGTATAATGGTTTTAATGACTATTCCAGTTCCAAGTATGGAAGAGGTGGTGATGGACGCATTCCATTTGGTGAAAGATTTGCCCAATCTGATGGAAATGCTTTGGGAATGAGGGGAAGAGGGCCATCTTGGAGATCTGACATGTCTGAGGGCTGGGATCATCCTGGGTATGGTGCTTCTAGAAATGGTCAGATGTCCTCAAGGAGGGCTTTTGGGGGTAGTTCTGCTGATGGAAGATCGCCAAAATCTGTGCATGAGAGTGATCAAGCAGGCAACAGAAGAGCTTGGGATAAAGCAGCAATGCCCATTCGGCTTGGTGAGGGGCCTTCTGCTAGAAGTGTCTGGCAAGCTTCTAAGGATGAAGCTACCTTGGAAGCAATTCGGGTTGCTGGTGAGGACAATGGAACATCTCGAGCAACAAGGGTAGCAATCCCTGAAATGACTGCTGAAGCTATGGCTGATGACAATGTTGGGCAAGAGAAGGATGCCATCTGGACTTCTTGGACCAATGCAATGGATGCCCTTCAAGTAGGTGACATAGATTCAGCCTTTGCAGAAGTATTGTCCACTGGTGATGATATTTTGCTTGTAAAGATAATGGATAGAACGGGCCCTGTAATTGACCAACTTTCAAGTGAAGTTGCATGTGAAATTGTGAATGCCATTGGACAATTCTTACTTGACCAGAACATGTATGACATCTGTTTGTCTTGGATTCAACAGTTGCTGGAGATAGTATTGGAAAATGGCCCTGACACCTTTGGTATTCCCATGGAAGTGAAGAAAGAGCTCTTGCTGAATTTACACGAAGCTTCTACAGATCCAGCTGAGGCCTGGGAAGGGGTACAGCCGGATCAGCTTTTATTGCAGTTGGCATCAGCCTGGGAAATTGATCTACAACAGCATGACAAATAG
>Glyma02g25230.1 sequence type=predicted peptide gene model=Glyma02g25230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKHPKPQTQSTPTPSPSSRSSSLSSHLAMVELKQKILTSLSKLSDRDTHQIAVEDLEKTISGLSPDAIPMILNCLYDAATDPKPAVKRDALRLLAAVCAAHSDAAAAHLTKIIAHVVRRLKDADSAVRDACRDTVGALAAQYLKGDGGGGGGGGVGTVVGLFVKPLFEAMGEQNKGVQAGAAVCMAKMVECGGGGGGGEAVPVAAFQKLCPRICKLLNSPNFMAKAAILPVGCQLGHRVGAVAPQSLEHLLPSIHECLSSTDWATRKAAAEALSSLALHSSNLVTNRAEPTLAVLEACRFDKIKPVRDSINEALQLWKKIAGKGDGSPNDSKPSSDGGNESAISSEASDPKKVNLDERKTDSPVKDSSNISSNMDSTKAKAAGISEKAVVILKKKPPVLSDKELNPEFFQKLERRGSDDLPVEVVVPRRGLNSLNSNNEEESEANAKDSKERINSVGNIPNDDFHGSSSNKYRIFERGNDGNSKQRNYDDFGHDRFSERRVNSKELRTKAYDTDDRTENDQREGSANVSGFSKIDGQSEVPFSNNRGNWLAIQRQLLQLERQQVHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMSRDLSISSGRRNFAGFEGSSNRPSSKYNGFNDYSSSKYGRGGDGRIPFGERFAQSDGNALGMRGRGPSWRSDMSEGWDHPGYGASRNGQMSSRRAFGGSSADGRSPKSVHESDQAGNRRAWDKAAMPIRLGEGPSARSVWQASKDEATLEAIRVAGEDNGTSRATRVAIPEMTAEAMADDNVGQEKDAIWTSWTNAMDALQVGDIDSAFAEVLSTGDDILLVKIMDRTGPVIDQLSSEVACEIVNAIGQFLLDQNMYDICLSWIQQLLEIVLENGPDTFGIPMEVKKELLLNLHEASTDPAEAWEGVQPDQLLLQLASAWEIDLQQHDK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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