SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g24921

Feature Type:gene_model
Chromosome:Gm02
Start:25907469
stop:25910473
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g24921
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52990AT Annotation by Michelle Graham. TAIR10: Pyruvate kinase family protein | chr3:19649336-19652237 FORWARD LENGTH=474 SoyBaseE_val: 4.00E-122ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004743GO-mf Annotation by Michelle Graham. GO Molecular Function: pyruvate kinase activity SoyBaseN/AISS
GO:0030955GO-mf Annotation by Michelle Graham. GO Molecular Function: potassium ion binding SoyBaseN/AISS
PTHR11817Panther PYRUVATE KINASE JGI ISS
PF00224PFAM Pyruvate kinase, barrel domain JGI ISS
PF02887PFAM Pyruvate kinase, alpha/beta domain JGI ISS
UniRef100_I3T243UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate kinase n=1 Tax=Lotus japonicus RepID=I3T243_LOTJA SoyBaseE_val: 9.00E-123ISS
UniRef100_UPI000233717FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233717F related cluster n=1 Tax=unknown RepID=UPI000233717F SoyBaseE_val: 7.00E-129ISS

Expression Patterns of Glyma02g24921
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g24921 not represented in the dataset
Glyma02g24921 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g24921 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g165000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g24921
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g24921
>Glyma02g24921.1   sequence type=CDS   gene model=Glyma02g24921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTTATCCAAGGCAGTGATGCAATTGTTCTTGGGGCAGAAACTTTGCGGGGGTTATACCCTGTAGAGACTATTTCCACTGTTGGAAAAATTTGTGCTGAGGCAGAGAAAGTTTATAATCAAGATTTGTATTTCAAGAAGGCTGTCAAATTTGTTGGAGAGCCGATGACTCATTTGGAATCAATAGCTTCCTCTGCGGTACGGGCAGCCATCAAGGTTAAGGCTTCTGTTATTATTTGCTTTACTTCATCTGGCAGGGCTGCAAGGTTGATTGCTAAGTACCGTCCAACCATGCCTGTGATATCCGTTGTCATTCCTCAACTAAAGACAAATCAACTTCGATGGACTTTCACTGGAGCTTTTGAGGCAAGGCAATCACTTATTGTGAGAGGTCTTTTCCCTATGCTTGCAGATCCACGACATCCAGCTGAGTCTAAAAGTGCAACAAATGAATCAATTTTGAAGGTTGCTTTAGACCATGGCAAGGCTTTTGGTATCATAAAGGCACATGATCGAGTTGTTGTATGCCAGAAAGTTGGTGACTCCTCAGTTGTGAAGATTATTGAGCTTGACGAATAG
Predicted protein sequences of Glyma02g24921
>Glyma02g24921.1   sequence type=predicted peptide   gene model=Glyma02g24921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFIQGSDAIVLGAETLRGLYPVETISTVGKICAEAEKVYNQDLYFKKAVKFVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVISVVIPQLKTNQLRWTFTGAFEARQSLIVRGLFPMLADPRHPAESKSATNESILKVALDHGKAFGIIKAHDRVVVCQKVGDSSVVKIIELDE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo