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Report for Sequence Feature Glyma02g23380

Feature Type:gene_model
Chromosome:Gm02
Start:23202032
stop:23203047
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g23380
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19640AT Annotation by Michelle Graham. TAIR10: ASH1-related protein 2 | chr2:8491401-8492597 FORWARD LENGTH=398 SoyBaseE_val: 3.00E-45ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR12197Panther SET AND MYND DOMAIN CONTAINING JGI ISS
PTHR12197:SF90Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_C6TII0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TII0_SOYBN SoyBaseE_val: 1.00E-92ISS
UniRef100_G7K6V9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase ASHR2 n=1 Tax=Medicago truncatula RepID=G7K6V9_MEDTR SoyBaseE_val: 5.00E-74ISS

Expression Patterns of Glyma02g23380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g23380 not represented in the dataset
Glyma02g23380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g23380 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.U026400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g23380
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g23380
>Glyma02g23380.1   sequence type=CDS   gene model=Glyma02g23380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCATAGTCATGGTTGCTTCAAGGTCTCTTTTGAGGATGGAACAAATACCTGGCAAAGGAAGAGGTCTTGTTGCATCACAGCTTCTAAAAGCAGGCCAAATACTTCTCCTCTCTTCACACCCTCTTCTTCACCTTACACTTACTATGACCATTGTTTTAGAATCTTACCTCTCACTCACAATAGTACTACTGTCACAACGCCAAGTCCAAGCCCATTTAATTGTTGCTTCTCACAACCTCTTCCTTCATAATCACACCCCTTCTAAGCTACACACTTTTCTTTATCTTCATGGCACCCCAGATGATGCTATTCTTGATGCTGCTAACTTTCTTCACTCACTAATCTCACCACTTTTCCCACCGCAGGCTCAACTCTCTGTGGATCTCATTGCACAACTTCTTGCAAAGGACAGACTCAACTCCTTTGGCTTAATGGACCCGTATTCCTGTAATGGCCCTCAGAGATCTATTAAGGCTTATGCTATTTACCCCAAAGCCACGTTCTTCAACCATGACTGTGTTCCCAATGCATCCAGGTTTGAGTATGTGGACAGTACTAATGATGATTATGGACATAACAAGGGACTACTGTACAAGGAAAGGATCTTGATGGAGGATTATGGGTTTACTTGTGGATGTGATAGGTGCAAGATTGAAGTTAATTGGGATGGTGAAGAAAACAACAGTGACCTTCCACACGTGCAATTTCTTAGCAAGTATGTTTGTGAGAGGAATCAATATACTAAAAGCACCTTTCCTGAATTTTAA
Predicted protein sequences of Glyma02g23380
>Glyma02g23380.1   sequence type=predicted peptide   gene model=Glyma02g23380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIVMVASRSLLRMEQIPGKGRGLVASQLLKAGQILLLSSHPLLHLTLTMTIVLESYLSLTIVLLSQRQVQAHLIVASHNLFLHNHTPSKLHTFLYLHGTPDDAILDAANFLHSLISPLFPPQAQLSVDLIAQLLAKDRLNSFGLMDPYSCNGPQRSIKAYAIYPKATFFNHDCVPNASRFEYVDSTNDDYGHNKGLLYKERILMEDYGFTCGCDRCKIEVNWDGEENNSDLPHVQFLSKYVCERNQYTKSTFPEF*






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