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Report for Sequence Feature Glyma02g23170

Feature Type:gene_model
Chromosome:Gm02
Start:23195593
stop:23197699
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g23170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49290AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13620.1); Has 99 Blast hits to 93 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18232608-18233624 REVERSE LENGTH=338 SoyBaseE_val: 5.00E-47ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0030048GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based movement SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JFQ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFQ9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9XI97UniRef Annotation by Michelle Graham. Most informative UniRef hit: F13F21.27 protein n=1 Tax=Arabidopsis thaliana RepID=Q9XI97_ARATH SoyBaseE_val: 2.00E-44ISS

Expression Patterns of Glyma02g23170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g23170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.U026500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g23170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g23170
>Glyma02g23170.1   sequence type=CDS   gene model=Glyma02g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGCTTTCTCCCATGCCCAGACCTAGGTACCAATCTGATTGTTTCAAAAGAAGAGTTCTTTAGCTTCCACAACATTGATCGTCAACTCTTCACCCGTTTGGTGGTAGTACTAGGCCGTGACACCAGCCAATCTACACATGTCATGGCCTTCATTATGTGGCTTGAAAAGCAATGCAAGGATATGAAAATGATAAAGAACATGCTCCAATGGTCTGACACCATGATTGATAGCCTTGCAGATGAGGTCATCTTGGTTTTGAATTGCGTTGAGAGTTCTCAATTCCCTTATGATGATGTTGTTAACGATGAAACCTTGCCTTTGATCAAAAACATCCTACAAAACAACGTTGCAAATCTCAAATACTTTTATGATAACCGTGTGACTATCATCGGAGCAGTCACCAAGTTACTTAACAATGTTTGTGTCAGGGCCTTCATAGATATAGTGCATGAAGTGCAATATATGAAGGCTATGAAGGAACAAAACTTGCAGATCGCAAATATCTATGGAACTGATCCATATGCAAAACAAGCAGTATATTATACTCCACTGCCTAGTGTTACTTTTGTCTCCCAACAGGTTGCAATACCAACACCACAATGGAGTGAAGGGAACTCAAGTTCTCAGGAGACCAATATCAATCCTCCTTTAGAGACTTGTGATGTTTCATACCAAACAGATTTTAATCAAAATTTGAACGAGCTCTTGGCCATGCTGAATGAAACTAGTATTACTACTAGTGCTAGTGATGGGAAAAAGGAGGTGCTGGTTGATGATAGGATTATCTTTATGACATTCTCTAAAGGGTATCCTATTTCGGAGGCTGAAGTAAGAGAGTTCTTCGCAAGAAGGTATGGGGATATCATTGAAGCATTTCATATGCAAGATGTGGTTCCACCGCAACAACCATTGTATGCTCGCATAGTGATTCGCACTGAGGCCATACAATTCATTGATCATTTGCTTGAGAGCACAAATAAAGTGAAGCTCTCCATCAATGGGAAGCACGCTTGGGCAAGAAAATATGTTCGCAAGGGTAACAAGTCACCAATGACTTCTCGAGCACCTTCCCCAACTTCAACAAGACCATCTTATTGA
Predicted protein sequences of Glyma02g23170
>Glyma02g23170.1   sequence type=predicted peptide   gene model=Glyma02g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACFLPCPDLGTNLIVSKEEFFSFHNIDRQLFTRLVVVLGRDTSQSTHVMAFIMWLEKQCKDMKMIKNMLQWSDTMIDSLADEVILVLNCVESSQFPYDDVVNDETLPLIKNILQNNVANLKYFYDNRVTIIGAVTKLLNNVCVRAFIDIVHEVQYMKAMKEQNLQIANIYGTDPYAKQAVYYTPLPSVTFVSQQVAIPTPQWSEGNSSSQETNINPPLETCDVSYQTDFNQNLNELLAMLNETSITTSASDGKKEVLVDDRIIFMTFSKGYPISEAEVREFFARRYGDIIEAFHMQDVVPPQQPLYARIVIRTEAIQFIDHLLESTNKVKLSINGKHAWARKYVRKGNKSPMTSRAPSPTSTRPSY*






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