Glyma02g22760 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g22760

Feature Type:	gene_model
Chromosome:	Gm02
Start:	21966741
stop:	21969426
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g22760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40830	AT	Annotation by Michelle Graham. TAIR10: RING-H2 finger C1A \| chr2:17043642-17044628 FORWARD LENGTH=328	SoyBase	E_val: 3.00E-115	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22763	Panther	RING ZINC FINGER PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_D7LFV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ring-H2 finger C1A n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LFV0_ARALL	SoyBase	E_val: 4.00E-115	ISS
UniRef100_I1JFQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFQ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g22760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g22760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g161600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g22760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g22760

Limit To All Plant Sequences

>Glyma02g22760.2   sequence type=transcript   gene model=Glyma02g22760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCATTTTATTTTGTTTGTCTTTTGTTCTCATTAGCTGTTCTGAGATTCGGAGAGATGGGTTTGGAAGAAGCTTCCAGAAACTGTATATAAGTCATCATGCTGTTGTGACAGTTAAAGGTAGTGTGGTGTGGGGAAGGAGCCTAGTGATTAGTTGTTTGAGACCACTAAGGAAGTGAACAAGAGGATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTTGGCTGGGACGGCGAGATGCGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGAAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCAGAAGCCATGACATCAGGGCGCAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTTAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGGGCACCAGGAATTGGTCTAACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCAAGATCATCAATCGATGCAATGCCTACCATTAAGATCACGCAGAGGCATCTTCGATCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAAGTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGTCAGGAACTGCTGCCACAAGGATTGAGTAGTAGTAACCGCAGCACAAATGGTAGAAGTAGAAGTGCAAGTTTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCTCACCGACACCAACTATCCCTGAGAACAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGACTTAGTGTGAGTAGAACATTTTCTTTTGTTTATTAAATCTGCTCCTGTTGATTGAAAAATCTTATGGACTGATGCTGCTTGCTTGGGGTGAAAACGGTTTGAGACCTGAGTCTACCAGTCTGGATTTGCTTTCTAAAGTTGTGAACTATTTTGTATAAATGGTTATTTATGCATAATTGTTTGAATCTAATATTCAATATAACAAGTTTTCTTTGTTTAATAGATAA

>Glyma02g22760.3   sequence type=transcript   gene model=Glyma02g22760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATTAAAAGAAAATAATACATAGAAACCAACCACACTATGCAGACGCAGTAGGACTGTAGAGGAAAGAATGAAGCATGCGGTGCCAGCTAAGCTGTATGTCGGTTCCTCCTCAATAATCGTCTTTCCCTGCCCCATGCCATCATCCAGTGGTTAGGGTTGGAGAACTTGCCCTCACTTTTTTCTTCCTTCTTCACTCTTAGTCTCACTCACTCACCATTCACCATTGTCCTTTGCATCGCTCTAAGCAACACGTCCTTTTCTTCACATATTCCAGTGTGTATATAAGTCATCATGCTGTTGTGACAGTTAAAGGTAGTGTGGTGTGGGGAAGGAGCCTAGTGATTAGTTGTTTGAGACCACTAAGGAAGTGAACAAGAGGATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTTGGCTGGGACGGCGAGATGCGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGAAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCAGAAGCCATGACATCAGGGCGCAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTTAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGGGCACCAGGAATTGGTCTAACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCAAGATCATCAATCGATGCAATGCCTACCATTAAGATCACGCAGAGGCATCTTCGATCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAAGTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGTCAGGAACTGCTGCCACAAGGATTGAGTAGTAGTAACCGCAGCACAAATGGTAGAAGTAGAAGTGCAAGTTTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCTCACCGACACCAACTATCCCTGAGAACAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGACTTAGTGTGAGTAGAACATTTTCTTTTGTTTATTAAATCTGCTCCTGTTGATTGAAAAATCTTATGGACTGATGCTGCTTGCTTGGGGTGAAAACGGTTTGAGACCTGAGTCTACCAGTCTGGATTTGCTTTCTAAAGTTGTGAACTATTTTGTATAAATGGTTATTTATGCATAATTGTTTGAATCTAATATTCAATATAACAAGTTTTCTTTGTTTAATAGATAA

Coding sequences of Glyma02g22760

Limit To All Plant Sequences

>Glyma02g22760.1   sequence type=CDS   gene model=Glyma02g22760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTTGGCTGGGACGGCGAGATGCGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGAAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCAGAAGCCATGACATCAGGGCGCAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTTAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGGGCACCAGGAATTGGTCTAACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCAAGATCATCAATCGATGCAATGCCTACCATTAAGATCACGCAGAGGCATCTTCGATCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAAGTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGTCAGGAACTGCTGCCACAAGGATTGAGTAGTAGTAACCGCAGCACAAATGGTAGAAGTAGAAGTGCAAGTTTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCTCACCGACACCAACTATCCCTGAGAACAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA

>Glyma02g22760.2   sequence type=CDS   gene model=Glyma02g22760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTTGGCTGGGACGGCGAGATGCGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGAAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCAGAAGCCATGACATCAGGGCGCAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTTAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGGGCACCAGGAATTGGTCTAACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCAAGATCATCAATCGATGCAATGCCTACCATTAAGATCACGCAGAGGCATCTTCGATCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAAGTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGTCAGGAACTGCTGCCACAAGGATTGAGTAGTAGTAACCGCAGCACAAATGGTAGAAGTAGAAGTGCAAGTTTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCTCACCGACACCAACTATCCCTGAGAACAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA

>Glyma02g22760.3   sequence type=CDS   gene model=Glyma02g22760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTTGGCTGGGACGGCGAGATGCGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGAAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCAGAAGCCATGACATCAGGGCGCAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTTAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGGGCACCAGGAATTGGTCTAACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCAAGATCATCAATCGATGCAATGCCTACCATTAAGATCACGCAGAGGCATCTTCGATCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAAGTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGTCAGGAACTGCTGCCACAAGGATTGAGTAGTAGTAACCGCAGCACAAATGGTAGAAGTAGAAGTGCAAGTTTAAGTAGTAGTGGTAGGGAGAGCCATGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACAGGAAGCAGCTCACCGACACCAACTATCCCTGAGAACAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA

Predicted protein sequences of Glyma02g22760

Limit To All Plant Sequences

>Glyma02g22760.1   sequence type=predicted peptide   gene model=Glyma02g22760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSRNTHWCYSCRRPVWLGRRDAVCPSCNEGFVHELNDMVHVNPFDLFEMDNNEERDQRLGLMETFSAFMRHQMADRGRSHDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFEVGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELLPQGLSSSNRSTNGRSRSASLSSSGRESHGRRNPFSFLWPFRSSHSSSNDEATGSSSPTPTIPENSHHHHAGYSGWPFE*

>Glyma02g22760.2   sequence type=predicted peptide   gene model=Glyma02g22760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSRNTHWCYSCRRPVWLGRRDAVCPSCNEGFVHELNDMVHVNPFDLFEMDNNEERDQRLGLMETFSAFMRHQMADRGRSHDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFEVGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELLPQGLSSSNRSTNGRSRSASLSSSGRESHGRRNPFSFLWPFRSSHSSSNDEATGSSSPTPTIPENSHHHHAGYSGWPFE*

>Glyma02g22760.3   sequence type=predicted peptide   gene model=Glyma02g22760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSRNTHWCYSCRRPVWLGRRDAVCPSCNEGFVHELNDMVHVNPFDLFEMDNNEERDQRLGLMETFSAFMRHQMADRGRSHDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFEVGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELLPQGLSSSNRSTNGRSRSASLSSSGRESHGRRNPFSFLWPFRSSHSSSNDEATGSSSPTPTIPENSHHHHAGYSGWPFE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain