SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17720 | AT | Annotation by Michelle Graham. TAIR10: Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500 | SoyBase | E_val: 4.00E-79 | ISS |
| GO:0006470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0000159 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 2A complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| PTHR11871 | Panther | PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B | JGI | ISS | |
| UniRef100_Q9FVD4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform n=1 Tax=Medicago sativa subsp. x varia RepID=Q9FVD4_MEDSV | SoyBase | E_val: 2.00E-84 | ISS |
| UniRef100_UPI0002337171 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337171 related cluster n=1 Tax=unknown RepID=UPI0002337171 | SoyBase | E_val: 2.00E-111 | ISS |
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Glyma02g22250 not represented in the dataset |
Glyma02g22250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g162100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g22250.1 sequence type=CDS gene model=Glyma02g22250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTGGAAGAAAGGAGGCACAACACAACGATGTACGGGCAGGAGGGAGAGAGTCAGGTTATAATATCATCAGAATTTCACCCTACACATTGTAATATGTTGGCATATAGCAGTTCAAAGGGTTCAATTCATCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTATTTGAGGAACATGATGGCCCAGGGTCTAGATCATTTTTCACAAAGATTATTGCTTGTATCTCAAACATAAAAGTTGGGAAGGATGGAAGATACATACTTAGTCGGAATTTGTGGGACATTAATATGGATTCATGCCCCGTTGCAACTTTCGAGGTTCATGAGTATTTGAGACCCAAGTATGAATGTTTTCTAAGTGGTGATAGATTGTGCGTAGCAACTGGTTCTTACAGCAATCTTTTTCGTGTGTTTGGTTGTGACCCTGGAAGAGCAGAAGCCCCTAGAGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAATTTGCTGCACTTAGCATGTCATCCAAGTGAGAATTCAATTGCTCGTGCTGCTGCTTTGAGTTTGTACATGTACTATGCCTAA
>Glyma02g22250.1 sequence type=predicted peptide gene model=Glyma02g22250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVEERRHNTTMYGQEGESQVIISSEFHPTHCNMLAYSSSKGSIHLVDLRQSALCDSHAKLFEEHDGPGSRSFFTKIIACISNIKVGKDGRYILSRNLWDINMDSCPVATFEVHEYLRPKYECFLSGDRLCVATGSYSNLFRVFGCDPGRAEAPRVDANGNSFDFTTNLLHLACHPSENSIARAAALSLYMYYA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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