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Report for Sequence Feature Glyma02g21820

Feature Type:gene_model
Chromosome:Gm02
Start:20973294
stop:20977817
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g21820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10760AT Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr3:3369814-3370821 FORWARD LENGTH=335 SoyBaseE_val: 2.00E-67ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_B9RU56UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RU56_RICCO SoyBaseE_val: 1.00E-79ISS
UniRef100_I1JFQ0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFQ0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g21820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g21820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g162600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g21820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g21820
>Glyma02g21820.1   sequence type=CDS   gene model=Glyma02g21820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAAGAGGACTCAAATTGGTTCTCAAGTTGGGAAGAGGAGCTCCCTCCCCCAGAGGAACTCATGCCTCTATCGCAAACCCTAATAAGCCATAACCTTGCAATAGCCTTTGACATAACAAACCCCTCACAGCAACAACAACAACAACAATATTCACAACAAGGACAAGAACAAGAACAACAACAACAATTTCCTCATCAAGTACCGGACAACATCGACGAGGAACCCGCACGCACCCTGAAGCGGCCACGCCTGGTGTGGACCCCACAGCTACACAAGCGCTTCGTGGACGCCGTGGCCCACTTGGGGATCAAGAACGCCGTGCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGCTTGACCCGCGAAAACGTCGCGAGTCACCTGCAGAAGTACCGCCTCTACTTGAAGCGCATGCAGGGTTTGTCGGCCGGTGGCGGAGTTGGTAGGGTCGCCTCCGCCGACCCCACCACCGACCGCCTCTTCGCCAGCTCGCCCGTGCCGCCGCATTTCCTGCAGCGGCCGGGCTCCGACCACTTCTTGCCACTTGTGTCAGTGCCGGCGTTGCAGCAGCAGCAGCAGCGCCACCACCACCAGCACTTGGCAGTGGCAGCTTCCGCGGCAGCTGGCCACCGCCAATTTGGCTTGCCGCCGAATGGGCACTTTGAGCTTCCCATTTTATCGAGGATGGGGGCTCCGGTGCCGGGTTATGCGGCCGAGGATGTGGAATCCGGAGGGAGGAAGGTTCTTACTTTGTTTCCTGCTGGAGATGAATGA
Predicted protein sequences of Glyma02g21820
>Glyma02g21820.1   sequence type=predicted peptide   gene model=Glyma02g21820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREEDSNWFSSWEEELPPPEELMPLSQTLISHNLAIAFDITNPSQQQQQQQYSQQGQEQEQQQQFPHQVPDNIDEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAGGGVGRVASADPTTDRLFASSPVPPHFLQRPGSDHFLPLVSVPALQQQQQRHHHQHLAVAASAAAGHRQFGLPPNGHFELPILSRMGAPVPGYAAEDVESGGRKVLTLFPAGDE*






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