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Report for Sequence Feature Glyma02g21653

Feature Type:gene_model
Chromosome:Gm02
Start:20803843
stop:20811814
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g21653
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56750AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:21018326-21020192 REVERSE LENGTH=403 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
UniRef100_Q9LET2UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3g56750/T8M16_80 n=1 Tax=Arabidopsis thaliana RepID=Q9LET2_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0001B63EB6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B63EB6 related cluster n=1 Tax=unknown RepID=UPI0001B63EB6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g21653
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g21653 not represented in the dataset
Glyma02g21653 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g21653 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g162900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g21653
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g21653
>Glyma02g21653.2   sequence type=transcript   gene model=Glyma02g21653   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGAATTCTCTTCCATGTTCCCAAGAATCTCAAATCTCCCTCCCTCCCTCAACTCATTAGCAATGGCAACATACTATTAACACCCCTCTTCCTCCCTCTCCACCGTCCCGCAATTAAGATTCAAATGGCATTTCACAGAGCCTCGAAGGCGAAGCCAAAATCCGCGAGATCCCGAATTCTGCTCCTCGCGGCAGCAGTGACAGCGATTGCGCTTCTCTTCCTGTTCTCCTCTCTTCTTTCCACCACCGTCTCGAAAGCCAACCTCTTACAGCGACGACAACAACAGCCCTTCGAAAAGTACCTCTATTGGGGCACCCGCATCGACTGCCCCGGAAAACACTGTGGATCTTGCGAGGGCTTGGGCCACCAGGAATCCAGCCTCCGCTGCGCCCTCGAAGAAGCCCTCTTCCTCGGCAGAACCTTTGTGATGCCTTCGAGAATGTGTATTAATCCCATCCATAACAAGAAAGGGATCCTTCATCATTCCACTAATGCCAGTTCTGAGGAACTGTGGGATGCAAGTTCTTGTGCCATGGACTCTTTGTATGACACAGAACTTATGTCAGATACTGTTCCTGTGATTTTGGACAATTCAAAAGAGTGGTATAGGGTTCTATCGACTAGCATGAAGTTAGGGGCCAGAGGAGTTGCACATGTGGAAGGAGTTAGCCGGTTTGAACTTAAAGAAAATAGCCGCTACTCAGATTTGTTGCTCATAAACAGAACTGCAAGCCCTCTTTCTTGGTTTATGGAGTGCAAGGATCGAAACAACCGCAGTGCCATAATGTTGCCATATTCATTTCTTCCCTCAATGGCTGCAGGGAAACTAAGAGATGCAGCAGAAAAGATCAAAGCATTACTTGGTGATTATGATGCCATCCATGTTCGTCGTGGGGATAAAATAAAGACCCGGAAAGATAGATTTGGTGTAGCGAGGAGCTTGCACCCTCACCTTGATAGAGACACTCGGCCAGAGTTTATGCTTTGTAGGATAGCAAAGTGGGTCCCACCTGGAAGAACCTTGTTTATTGCTTCAAATGAAAGGACTCCAGGGTTTTTTTCACCACTTTCTGCCAGGTAACCATTATCATGTTCACATTTTGGGGGGTAACGGGGTGGGGATTCTATGTAGTAATTTCCTTTGGCTGCAC
Coding sequences of Glyma02g21653
>Glyma02g21653.1   sequence type=CDS   gene model=Glyma02g21653   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTCACAGAGCCTCGAAGGCGAAGCCAAAATCCGCGAGATCCCGAATTCTGCTCCTCGCGGCAGCAGTGACAGCGATTGCGCTTCTCTTCCTGTTCTCCTCTCTTCTTTCCACCACCGTCTCGAAAGCCAACCTCTTACAGCGACGACAACAACAGCCCTTCGAAAAGTACCTCTATTGGGGCACCCGCATCGACTGCCCCGGAAAACACTGTGGATCTTGCGAGGGCTTGGGCCACCAGGAATCCAGCCTCCGCTGCGCCCTCGAAGAAGCCCTCTTCCTCGGCAGAACCTTTGTGATGCCTTCGAGAATGTGTATTAATCCCATCCATAACAAGAAAGGGATCCTTCATCATTCCACTAATGCCAGTTCTGAGGAACTGTGGGATGCAAGTTCTTGTGCCATGGACTCTTTGTATGACACAGAACTTATGTCAGATACTGTTCCTGTGATTTTGGACAATTCAAAAGAGTGGTATAGGGTTCTATCGACTAGCATGAAGTTAGGGGCCAGAGGAGTTGCACATGTGGAAGGAGTTAGCCGGTTTGAACTTAAAGAAAATAGCCGCTACTCAGATTTGTTGCTCATAAACAGAACTGCAAGCCCTCTTTCTTGGTTTATGGAGTGCAAGGATCGAAACAACCGCAGTGCCATAATGTTGCCATATTCATTTCTTCCCTCAATGGCTGCAGGGAAACTAAGAGATGCAGCAGAAAAGATCAAAGCATTACTTGGTGATTATGATGCCATCCATGTTCGTCGTGGGGATAAAATAAAGACCCGGAAAGATAGATTTGGTGTAGCGAGGAGCTTGCACCCTCACCTTGATAGAGACACTCGGCCAGAGTTTATGCTTTGTAGGATAGCAAAGTGGGTCCCACCTGGAAGAACCTTGTTTATTGCTTCAAATGAAAGGACTCCAGGGTTTTTTTCACCACTTTCTGCCAGGTATAGATTGGCATATTCATCGAACTATAGCCATATCTTGGATCCGTTAATTGAGAACAATTATCAATTATTCATGATCGAGAGGCTTATAATGATGGGTGGTAAAACGTTCATTAGGACATTCAAGGAGGATGAGACAGATCTTAGCCTCACTGATGACCCCAAAAAGAACACTAAGCTTTGGCAGATACCTGTTTACAATGTGGATGAAACTTGTTGA

>Glyma02g21653.2   sequence type=CDS   gene model=Glyma02g21653   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTCACAGAGCCTCGAAGGCGAAGCCAAAATCCGCGAGATCCCGAATTCTGCTCCTCGCGGCAGCAGTGACAGCGATTGCGCTTCTCTTCCTGTTCTCCTCTCTTCTTTCCACCACCGTCTCGAAAGCCAACCTCTTACAGCGACGACAACAACAGCCCTTCGAAAAGTACCTCTATTGGGGCACCCGCATCGACTGCCCCGGAAAACACTGTGGATCTTGCGAGGGCTTGGGCCACCAGGAATCCAGCCTCCGCTGCGCCCTCGAAGAAGCCCTCTTCCTCGGCAGAACCTTTGTGATGCCTTCGAGAATGTGTATTAATCCCATCCATAACAAGAAAGGGATCCTTCATCATTCCACTAATGCCAGTTCTGAGGAACTGTGGGATGCAAGTTCTTGTGCCATGGACTCTTTGTATGACACAGAACTTATGTCAGATACTGTTCCTGTGATTTTGGACAATTCAAAAGAGTGGTATAGGGTTCTATCGACTAGCATGAAGTTAGGGGCCAGAGGAGTTGCACATGTGGAAGGAGTTAGCCGGTTTGAACTTAAAGAAAATAGCCGCTACTCAGATTTGTTGCTCATAAACAGAACTGCAAGCCCTCTTTCTTGGTTTATGGAGTGCAAGGATCGAAACAACCGCAGTGCCATAATGTTGCCATATTCATTTCTTCCCTCAATGGCTGCAGGGAAACTAAGAGATGCAGCAGAAAAGATCAAAGCATTACTTGGTGATTATGATGCCATCCATGTTCGTCGTGGGGATAAAATAAAGACCCGGAAAGATAGATTTGGTGTAGCGAGGAGCTTGCACCCTCACCTTGATAGAGACACTCGGCCAGAGTTTATGCTTTGTAGGATAGCAAAGTGGGTCCCACCTGGAAGAACCTTGTTTATTGCTTCAAATGAAAGGACTCCAGGGTTTTTTTCACCACTTTCTGCCAGGTAA
Predicted protein sequences of Glyma02g21653
>Glyma02g21653.1   sequence type=predicted peptide   gene model=Glyma02g21653   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFHRASKAKPKSARSRILLLAAAVTAIALLFLFSSLLSTTVSKANLLQRRQQQPFEKYLYWGTRIDCPGKHCGSCEGLGHQESSLRCALEEALFLGRTFVMPSRMCINPIHNKKGILHHSTNASSEELWDASSCAMDSLYDTELMSDTVPVILDNSKEWYRVLSTSMKLGARGVAHVEGVSRFELKENSRYSDLLLINRTASPLSWFMECKDRNNRSAIMLPYSFLPSMAAGKLRDAAEKIKALLGDYDAIHVRRGDKIKTRKDRFGVARSLHPHLDRDTRPEFMLCRIAKWVPPGRTLFIASNERTPGFFSPLSARYRLAYSSNYSHILDPLIENNYQLFMIERLIMMGGKTFIRTFKEDETDLSLTDDPKKNTKLWQIPVYNVDETC*

>Glyma02g21653.2   sequence type=predicted peptide   gene model=Glyma02g21653   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFHRASKAKPKSARSRILLLAAAVTAIALLFLFSSLLSTTVSKANLLQRRQQQPFEKYLYWGTRIDCPGKHCGSCEGLGHQESSLRCALEEALFLGRTFVMPSRMCINPIHNKKGILHHSTNASSEELWDASSCAMDSLYDTELMSDTVPVILDNSKEWYRVLSTSMKLGARGVAHVEGVSRFELKENSRYSDLLLINRTASPLSWFMECKDRNNRSAIMLPYSFLPSMAAGKLRDAAEKIKALLGDYDAIHVRRGDKIKTRKDRFGVARSLHPHLDRDTRPEFMLCRIAKWVPPGRTLFIASNERTPGFFSPLSAR*






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