SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G42990 | AT | Annotation by Michelle Graham. TAIR10: basic region/leucine zipper motif 60 | chr1:16136062-16137459 REVERSE LENGTH=295 | SoyBase | E_val: 2.00E-15 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006984 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER-nucleus signaling pathway | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR22952 | Panther | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR22952:SF68 | Panther | ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60), D | JGI | ISS | |
| PF07716 | PFAM | Basic region leucine zipper | JGI | ISS | |
| UniRef100_Q0GPH4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP68 n=1 Tax=Glycine max RepID=Q0GPH4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q0GPH4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: BZIP transcription factor bZIP68 n=1 Tax=Glycine max RepID=Q0GPH4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g19754 not represented in the dataset |
Glyma02g19754 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g161100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g19754.1 sequence type=CDS gene model=Glyma02g19754 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGAATTAGAAGAAACCCTACTCACCCAAATCGACTGGGAATCGTTCCTCGACGACATACCTGAACTTAACGTCGATGATTTTTTGCAGGACGACAACGCCGTTCCTGTTGTTACCGACAATCATTCCTCCCCGAACGACGACCCCGTTTTGTCCGAGATCGAGAACATGCTCATGACGCAGGCCGAAAACGACGCTGTCGTTTTGCCCGAGACGCCGTCTTCGGAGGCCGGGTATTACAAGCTCTTCGAGGAGATTCTGGTGGAGGAGCCCAAGGAAGGACCCGTGAGCCCGCCTTCAAAAATAGAGTCCGAGGAAGGCTCCGACAAAGACAAGACCGATGATGCTGCTTCCGATGAACCCATGTCGAAGAAATTAAAGAGGCAGTTGAGGAACAGGGATGCTGCTGTGAGGTCAAGGGAGAGGAAGAAGTTGTATGTGAAAAACCTTGAGATGAAGAGTAGGTACCTAGAAGGGGAATGCAGAAGACTGGGGCATTTGCTCCAGTGCTGCTATGCTGAGAACAACGCTTTGCGGCTTTGCTTGCAATTGCGTGGTACATATGGTGCTTCAATGACCATGCAGGAGTCTGCTGTGCTCTTGTTGGAACCTCTGCTGTTGGGTTCCCTGCTGTGGTGCATGGGCATCATATGCCATCTCAGTCTGCCTCTAATGCTGTGGGTTGCAGCAGTACTTCCAAGAGAAAACATCGAGCAGAAGGGCCTAAGAAGGGTAACTCAAAAAGGATCAGAAAGTAAGATCTCTGAGTGTTTCCAGATGCAATCATTTTTAAAGAGTAGAAAAAGCCGAGCTTCAAGAACAAAGATGAAATTCAATTTTATAGTGTTCTAA
>Glyma02g19754.1 sequence type=predicted peptide gene model=Glyma02g19754 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDELEETLLTQIDWESFLDDIPELNVDDFLQDDNAVPVVTDNHSSPNDDPVLSEIENMLMTQAENDAVVLPETPSSEAGYYKLFEEILVEEPKEGPVSPPSKIESEEGSDKDKTDDAASDEPMSKKLKRQLRNRDAAVRSRERKKLYVKNLEMKSRYLEGECRRLGHLLQCCYAENNALRLCLQLRGTYGASMTMQESAVLLLEPLLLGSLLWCMGIICHLSLPLMLWVAAVLPRENIEQKGLRRVTQKGSESKISECFQMQSFLKSRKSRASRTKMKFNFIVF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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