SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g19592): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g19592): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g19592

Feature Type:gene_model
Chromosome:Gm02
Start:18931014
stop:18931829
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g19592
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44100AT Annotation by Michelle Graham. TAIR10: guanosine nucleotide diphosphate dissociation inhibitor 1 | chr2:18241804-18244864 FORWARD LENGTH=445 SoyBaseE_val: 7.00E-47ISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0048227GO-bp Annotation by Michelle Graham. GO Biological Process: plasma membrane to endosome transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005093GO-mf Annotation by Michelle Graham. GO Molecular Function: RAB GDP-dissociation inhibitor activity SoyBaseN/AISS
PTHR11787Panther RAB GDP-DISSOCIATION INHIBITOR JGI ISS
PF00996PFAM GDP dissociation inhibitor JGI ISS
UniRef100_I1KSQ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSQ3_SOYBN SoyBaseE_val: 6.00E-50ISS
UniRef100_O22470UniRef Annotation by Michelle Graham. Most informative UniRef hit: GDP dissociation inhibitor protein OsGDI1 n=1 Tax=Oryza sativa RepID=O22470_ORYSA SoyBaseE_val: 3.00E-46ISS

Expression Patterns of Glyma02g19592
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g19592 not represented in the dataset
Glyma02g19592 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g19592 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g161000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g19592
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g19592
>Glyma02g19592.1   sequence type=CDS   gene model=Glyma02g19592   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGAGTACGATGTGAACATGTTGAGCACGAGTCTCAATGAGTGCATTCTCCGTGGTCTTCTCTCCATCGATGACCTCAAGGTTCTGCATATGGATAGGAATGAATATTATGGAGAAGAGTCCACTTCGCTCAATCTTAATAAGCTTTGGACCAGATTTAGGGGAAATGACAAGCTTCTTCCATATTTGGGCGCCAGTAGGGACTACAGCATGGATATGAACCCTAGGTTTAGTTTGGTTAATGGCAACTTGGTGCATGTTCTTATACATACCAATATTACCCATTCTCTCAATTTCAACGTTGTGGATGGCAGATATGTGTTTACTGAAGGAAAGATTCATAAGCGATCATCGCTACTTGGCACAACACTGGACACTGTGAAGAGAATGAAGTTATATGCAGAGTCTCTTGTACACTTTCAAGGAGGGTCACCTTACACACATCCTTTCTATGGTTTAGGAGAGCTTCCCCAGGCATTTGCATGGCTTAGTGTTGTTTTTGGTGAAACATATATGTTGCATAAGCTTAAGTGCAACATAGAATTTGATGAGGAAGGCAAGATTGTTGGTGTCACATCTGAATGA
Predicted protein sequences of Glyma02g19592
>Glyma02g19592.1   sequence type=predicted peptide   gene model=Glyma02g19592   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAEYDVNMLSTSLNECILRGLLSIDDLKVLHMDRNEYYGEESTSLNLNKLWTRFRGNDKLLPYLGASRDYSMDMNPRFSLVNGNLVHVLIHTNITHSLNFNVVDGRYVFTEGKIHKRSSLLGTTLDTVKRMKLYAESLVHFQGGSPYTHPFYGLGELPQAFAWLSVVFGETYMLHKLKCNIEFDEEGKIVGVTSE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo