Glyma02g19350 - SoyBase

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Report for Sequence Feature Glyma02g19350

Feature Type:	gene_model
Chromosome:	Gm02
Start:	18253338
stop:	18257914
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g19350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29760	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:12712884-12715100 FORWARD LENGTH=738	SoyBase	E_val: 0	ISS
GO:0031425	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF47	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9SI11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SI11_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JFN2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JFN2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g19350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g19350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g160400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g19350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g19350

Limit To All Plant Sequences

>Glyma02g19350.2   sequence type=transcript   gene model=Glyma02g19350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCACACTTTCACGTTCTGGTTCAGTTCTCAATGAAACCATTCTAACATGGGACTGGTAACTGTTCTTCAGCTTCAACTGCAGCCATCATTATCGTTCTCCCTTGATTTTGGTGGAAGGTTTTCATGCTCCTCAACCTCAAACTCCACACTTCTAAGGGTTTCTGTCAAGTGCTCTGCTCTTTCAACACCGTTATCGTTAGGCCAAATTGCAATGAATTGTACTGAGGCTGTGAAAGGTGAGAAGGGAAATGAAGTGGAGTCAACTAATATACTGGAATTCATTGACCAATGTACAAACACAATGCAGCTAAAGCAAATACATGCTCACATGCTCCGCACATCCCGCTTTTGTGATCCATATACTGCCAGCAAATTGCTGACTGCTTATGCTATCTCATCATGCTCTTGCCTCATATATGCTAAAAATGTGTTTAATCAAATCCCGCAACCAAATCTCTATTGTTGGAACACCCTTATTCGTGGATATGCCTCCAGCTCAGACCCTACTCAGAGTTTCTTGATTTTTTTACATATGCTACATTCCTGTTCAGAATTCCCAAACAAATTCACTTTCCCCTTTCTCTTCAAGGCAGCCTCGCGGCTCAAAGTTCTGCATCTTGGAAGCGTTTTACATGGAATGGTTATTAAGGCATCCTTGTCTTCAGACTTGTTCATACTGAATTCGCTGATAAATTTCTATGGTTCAAGTGGGGCACCGGATTTGGCTCATAGAGTTTTCACCAACATGCCAGGAAAAGATGTCGTTTCTTGGAATGCTATGATAAATGCCTTTGCACTTGGGGGCTTGCCTGATAAGGCATTGCTTTTGTTTCAGGAAATGGAGATGAAAGATGTGAAACCAAATGTTATCACAATGGTTAGTGTTCTTTCAGCTTGTGCAAAGAAGATAGACTTGGAATTTGGAAGGTGGATCTGTTCATATATTGAAAACAATGGGTTTACTGAGCACTTGATTTTGAATAACGCAATGCTTGACATGTATGTTAAATGCGGTTGTATTAATGATGCAAAAGATTTGTTTAATAAGATGTCAGAGAAAGATATTGTTTCTTGGACGACAATGCTTGACGGTCATGCCAAATTAGGAAATTATGATGAGGCTCACTGTATATTTGATGCAATGCCTCATAAATGGACTGCTGCATGGAATGCCCTGATCTCTGCATATGAACAGAATGGAAAGCCTAGGGTGGCTTTGTCACTCTTCCATGAAATGCAGCTCAGTAAGGATGCAAAACCAGATGAAGTTACTCTTATTTGTGCATTGTGTGCTAGTGCCCAGTTGGGGGCAATTGATTTTGGTCACTGGATTCATGTATACATAAAGAAGCATGACATTAATCTAAACTGTCATTTAGCAACCTCTCTCCTTGATATGTATGCTAAATGTGGAAATCTAAATAAGGCGATGGAGGTGTTTCATGCAGTAGAAAGGAAAGATGTGTATGTTTGGAGTGCCATGATTGGTGCTCTGGCGATGTACGGGCAAGGGAAAGCAGCCTTAGATTTGTTCTCAAGCATGTTAGAAGCTTATATCAAGCCAAATGCTGTGACATTTACAAACATATTGTGTGCTTGTAACCATGCAGGACTGGTCAATGAGGGAGAGCAACTTTTTGAACAAATGGAACCATTATACGGTATTGTGCCTCAAATACAACACTACGTTTGCGTGGTTGACATATTTGGACGTGCAGGTCTTCTGGAAAAAGCTGCATCATTCATAGAGAAGATGCCAATACCACCAACTGCTGCTGTGTGGGGAGCTTTGCTCGGGGCCTGTAGTCGCCATGGAAATGTCGAGCTTGCTGAACTTGCTTATCAGAATCTACTTGAATTAGAACCTTGTAACCATGGAGCCTTTGTCCTTTTATCAAATATATATGCTAAAGCAGGGGACTGGGAGAAAGTTTCCAATCTAAGAAAGCTTATGAGAGATTCTGATGTGAAGAAAGAACCTTGGTGTAGCTCAATCGATGTTAATGGTATTGTGCATGAGTTTCTGGTGGGTGATAACTCCCATCCTTTTTCTCAAAAAATCTACTCAAAGTTGGATGAAATTTCAGAAAAGTTTAAGCCAATTGGTTACAAACCAGACATGTCTAACCTTTTGCAACTTAGTGAAGAAGATAACTTAATGGAGCAGTCCCTGAATGTTCATAGCGAAAAATTGGCAATAGCTTTTGGACTTATTAGCACTGCATCGTCTCAACCGATTCGAATAGTGAAGAATATTCGCATTTGTGGAGACTGCCATGCCTTTGCTAAACTTGTTTCTCAACTTTATGATAGAGATATATTGTTGAGAGACCGCTATCGTTTCCATCATTTCAGAGGAGGGAAATGCTCATGCCTGGATTATTGGTGAGTTATGCAATGTTTCACAATGTATAGATGGAGGAGAATGGAGGAAAAGAGGTGGAAGAAGATTTTCATTTCCTAAGTAGGATAATTTTAAAATGTTGAAGCTAAGCCAGCATGTTTCGTCCAAAGGAAATAGCTAATGACAAGTGGTAAATTATGTTAATGATTAAGGGTTAATTGCTTACATGACTTCATTGATTAATCACTAGCATAACCTTCTTGATCATAGTCTAGAATATGACTTCCATCTAAAACTCAAATGCTTGTCCCCAAAACTTGACTTTC

Coding sequences of Glyma02g19350

Limit To All Plant Sequences

>Glyma02g19350.1   sequence type=CDS   gene model=Glyma02g19350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCTAAAGCAAATACATGCTCACATGCTCCGCACATCCCGCTTTTGTGATCCATATACTGCCAGCAAATTGCTGACTGCTTATGCTATCTCATCATGCTCTTGCCTCATATATGCTAAAAATGTGTTTAATCAAATCCCGCAACCAAATCTCTATTGTTGGAACACCCTTATTCGTGGATATGCCTCCAGCTCAGACCCTACTCAGAGTTTCTTGATTTTTTTACATATGCTACATTCCTGTTCAGAATTCCCAAACAAATTCACTTTCCCCTTTCTCTTCAAGGCAGCCTCGCGGCTCAAAGTTCTGCATCTTGGAAGCGTTTTACATGGAATGGTTATTAAGGCATCCTTGTCTTCAGACTTGTTCATACTGAATTCGCTGATAAATTTCTATGGTTCAAGTGGGGCACCGGATTTGGCTCATAGAGTTTTCACCAACATGCCAGGAAAAGATGTCGTTTCTTGGAATGCTATGATAAATGCCTTTGCACTTGGGGGCTTGCCTGATAAGGCATTGCTTTTGTTTCAGGAAATGGAGATGAAAGATGTGAAACCAAATGTTATCACAATGGTTAGTGTTCTTTCAGCTTGTGCAAAGAAGATAGACTTGGAATTTGGAAGGTGGATCTGTTCATATATTGAAAACAATGGGTTTACTGAGCACTTGATTTTGAATAACGCAATGCTTGACATGTATGTTAAATGCGGTTGTATTAATGATGCAAAAGATTTGTTTAATAAGATGTCAGAGAAAGATATTGTTTCTTGGACGACAATGCTTGACGGTCATGCCAAATTAGGAAATTATGATGAGGCTCACTGTATATTTGATGCAATGCCTCATAAATGGACTGCTGCATGGAATGCCCTGATCTCTGCATATGAACAGAATGGAAAGCCTAGGGTGGCTTTGTCACTCTTCCATGAAATGCAGCTCAGTAAGGATGCAAAACCAGATGAAGTTACTCTTATTTGTGCATTGTGTGCTAGTGCCCAGTTGGGGGCAATTGATTTTGGTCACTGGATTCATGTATACATAAAGAAGCATGACATTAATCTAAACTGTCATTTAGCAACCTCTCTCCTTGATATGTATGCTAAATGTGGAAATCTAAATAAGGCGATGGAGGTGTTTCATGCAGTAGAAAGGAAAGATGTGTATGTTTGGAGTGCCATGATTGGTGCTCTGGCGATGTACGGGCAAGGGAAAGCAGCCTTAGATTTGTTCTCAAGCATGTTAGAAGCTTATATCAAGCCAAATGCTGTGACATTTACAAACATATTGTGTGCTTGTAACCATGCAGGACTGGTCAATGAGGGAGAGCAACTTTTTGAACAAATGGAACCATTATACGGTATTGTGCCTCAAATACAACACTACGTTTGCGTGGTTGACATATTTGGACGTGCAGGTCTTCTGGAAAAAGCTGCATCATTCATAGAGAAGATGCCAATACCACCAACTGCTGCTGTGTGGGGAGCTTTGCTCGGGGCCTGTAGTCGCCATGGAAATGTCGAGCTTGCTGAACTTGCTTATCAGAATCTACTTGAATTAGAACCTTGTAACCATGGAGCCTTTGTCCTTTTATCAAATATATATGCTAAAGCAGGGGACTGGGAGAAAGTTTCCAATCTAAGAAAGCTTATGAGAGATTCTGATGTGAAGAAAGAACCTTGGTGTAGCTCAATCGATGTTAATGGTATTGTGCATGAGTTTCTGGTGGGTGATAACTCCCATCCTTTTTCTCAAAAAATCTACTCAAAGTTGGATGAAATTTCAGAAAAGTTTAAGCCAATTGGTTACAAACCAGACATGTCTAACCTTTTGCAACTTAGTGAAGAAGATAACTTAATGGAGCAGTCCCTGAATGTTCATAGCGAAAAATTGGCAATAGCTTTTGGACTTATTAGCACTGCATCGTCTCAACCGATTCGAATAGTGAAGAATATTCGCATTTGTGGAGACTGCCATGCCTTTGCTAAACTTGTTTCTCAACTTTATGATAGAGATATATTGTTGAGAGACCGCTATCGTTTCCATCATTTCAGAGGAGGGAAATGCTCATGCCTGGATTATTGGTGA

>Glyma02g19350.2   sequence type=CDS   gene model=Glyma02g19350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTGGTAACTGTTCTTCAGCTTCAACTGCAGCCATCATTATCGTTCTCCCTTGATTTTGGTGGAAGGTTTTCATGCTCCTCAACCTCAAACTCCACACTTCTAAGGGTTTCTGTCAAGTGCTCTGCTCTTTCAACACCGTTATCGTTAGGCCAAATTGCAATGAATTGTACTGAGGCTGTGAAAGGTGAGAAGGGAAATGAAGTGGAGTCAACTAATATACTGGAATTCATTGACCAATGTACAAACACAATGCAGCTAAAGCAAATACATGCTCACATGCTCCGCACATCCCGCTTTTGTGATCCATATACTGCCAGCAAATTGCTGACTGCTTATGCTATCTCATCATGCTCTTGCCTCATATATGCTAAAAATGTGTTTAATCAAATCCCGCAACCAAATCTCTATTGTTGGAACACCCTTATTCGTGGATATGCCTCCAGCTCAGACCCTACTCAGAGTTTCTTGATTTTTTTACATATGCTACATTCCTGTTCAGAATTCCCAAACAAATTCACTTTCCCCTTTCTCTTCAAGGCAGCCTCGCGGCTCAAAGTTCTGCATCTTGGAAGCGTTTTACATGGAATGGTTATTAAGGCATCCTTGTCTTCAGACTTGTTCATACTGAATTCGCTGATAAATTTCTATGGTTCAAGTGGGGCACCGGATTTGGCTCATAGAGTTTTCACCAACATGCCAGGAAAAGATGTCGTTTCTTGGAATGCTATGATAAATGCCTTTGCACTTGGGGGCTTGCCTGATAAGGCATTGCTTTTGTTTCAGGAAATGGAGATGAAAGATGTGAAACCAAATGTTATCACAATGGTTAGTGTTCTTTCAGCTTGTGCAAAGAAGATAGACTTGGAATTTGGAAGGTGGATCTGTTCATATATTGAAAACAATGGGTTTACTGAGCACTTGATTTTGAATAACGCAATGCTTGACATGTATGTTAAATGCGGTTGTATTAATGATGCAAAAGATTTGTTTAATAAGATGTCAGAGAAAGATATTGTTTCTTGGACGACAATGCTTGACGGTCATGCCAAATTAGGAAATTATGATGAGGCTCACTGTATATTTGATGCAATGCCTCATAAATGGACTGCTGCATGGAATGCCCTGATCTCTGCATATGAACAGAATGGAAAGCCTAGGGTGGCTTTGTCACTCTTCCATGAAATGCAGCTCAGTAAGGATGCAAAACCAGATGAAGTTACTCTTATTTGTGCATTGTGTGCTAGTGCCCAGTTGGGGGCAATTGATTTTGGTCACTGGATTCATGTATACATAAAGAAGCATGACATTAATCTAAACTGTCATTTAGCAACCTCTCTCCTTGATATGTATGCTAAATGTGGAAATCTAAATAAGGCGATGGAGGTGTTTCATGCAGTAGAAAGGAAAGATGTGTATGTTTGGAGTGCCATGATTGGTGCTCTGGCGATGTACGGGCAAGGGAAAGCAGCCTTAGATTTGTTCTCAAGCATGTTAGAAGCTTATATCAAGCCAAATGCTGTGACATTTACAAACATATTGTGTGCTTGTAACCATGCAGGACTGGTCAATGAGGGAGAGCAACTTTTTGAACAAATGGAACCATTATACGGTATTGTGCCTCAAATACAACACTACGTTTGCGTGGTTGACATATTTGGACGTGCAGGTCTTCTGGAAAAAGCTGCATCATTCATAGAGAAGATGCCAATACCACCAACTGCTGCTGTGTGGGGAGCTTTGCTCGGGGCCTGTAGTCGCCATGGAAATGTCGAGCTTGCTGAACTTGCTTATCAGAATCTACTTGAATTAGAACCTTGTAACCATGGAGCCTTTGTCCTTTTATCAAATATATATGCTAAAGCAGGGGACTGGGAGAAAGTTTCCAATCTAAGAAAGCTTATGAGAGATTCTGATGTGAAGAAAGAACCTTGGTGTAGCTCAATCGATGTTAATGGTATTGTGCATGAGTTTCTGGTGGGTGATAACTCCCATCCTTTTTCTCAAAAAATCTACTCAAAGTTGGATGAAATTTCAGAAAAGTTTAAGCCAATTGGTTACAAACCAGACATGTCTAACCTTTTGCAACTTAGTGAAGAAGATAACTTAATGGAGCAGTCCCTGAATGTTCATAGCGAAAAATTGGCAATAGCTTTTGGACTTATTAGCACTGCATCGTCTCAACCGATTCGAATAGTGAAGAATATTCGCATTTGTGGAGACTGCCATGCCTTTGCTAAACTTGTTTCTCAACTTTATGATAGAGATATATTGTTGAGAGACCGCTATCGTTTCCATCATTTCAGAGGAGGGAAATGCTCATGCCTGGATTATTGGTGA

Predicted protein sequences of Glyma02g19350

Limit To All Plant Sequences

>Glyma02g19350.1   sequence type=predicted peptide   gene model=Glyma02g19350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW*

>Glyma02g19350.2   sequence type=predicted peptide   gene model=Glyma02g19350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLVTVLQLQLQPSLSFSLDFGGRFSCSSTSNSTLLRVSVKCSALSTPLSLGQIAMNCTEAVKGEKGNEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW*

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