Glyma02g18610 - SoyBase

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Report for Sequence Feature Glyma02g18610

Feature Type:	gene_model
Chromosome:	Gm02
Start:	17350445
stop:	17357305
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g18610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10390	AT	Annotation by Michelle Graham. TAIR10: Flavin containing amine oxidoreductase family protein \| chr3:3229293-3232345 FORWARD LENGTH=884	SoyBase	E_val: 0	ISS
GO:0009851	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin biosynthetic process	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010229	GO-bp	Annotation by Michelle Graham. GO Biological Process: inflorescence development	SoyBase	N/A	ISS
GO:0016575	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone deacetylation	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0029	KOG	Amine oxidase	JGI		ISS
PTHR10742	Panther	AMINE OXIDASE	JGI		ISS
PTHR10742:SF30	Panther	AMINE OXIDASE	JGI		ISS
PF01593	PFAM	Flavin containing amine oxidoreductase	JGI		ISS
PF04433	PFAM	SWIRM domain	JGI		ISS
UniRef100_B9SUC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amine oxidase, putative n=1 Tax=Ricinus communis RepID=B9SUC7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JFM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFM3_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma02g18610

Locus	Gene Symbol	Protein Name
	FLD	Flowering locus D
	LSD1	Lys-Specific Demethylase 1

Expression Patterns of Glyma02g18610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g18610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g159100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g18610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g18610

Limit To All Plant Sequences

>Glyma02g18610.1   sequence type=CDS   gene model=Glyma02g18610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCCCACTCCAATTTTCCTCTCCCCAAAACCCCAACCCCAACCCCAACCACAACGTGTTCTTGGACCCAACCTCCGATTCAATCCCAAACCTCCTCCAAAACCCGATCCACTACCTCTCCTTCTCCGTCCCCAAGAAACGCCGCCGCGGCCGCTCCCAGCGCAATCCGGCGTCGTTTCGCCTCCCTCCTCTCACCACCCTCCCTACCGCCGCCAACCCTTCTCCCTCAGCCTCCGACGAAATCATCTTCATCAACAAAGAGCCCAAAACCGAAGCCCTAATCGCCCTCACCGCTGGGTTCCCAGCGGACTCCCTCACGGAGGAGGAGATCGACGCCGCCGTGCTCCCGGTCATCGGCGGCATCGAGCAGGTCAACTACACTCTCATCCGGAACCACATAATTGCCAAATGGCGCGAAAATGTCTCCAATTGGGTGAGTAAGAAAACCTTCCTCGATTACATTCCGCCGCATTACCATTCGCTTTTGGATTCTGCGTATAACTACCTTGTCTCGCATGGTTACATCAATTTCGGAGTGGCTTCTTCGATTAAAGAGAGGGTTCCCGCGGAGGCGAGCAGGCCGGCGGTGATTGTCGTCGGCGCTGGGCTTGCCGGGCTGGCTGCCGCGCGGCAGCTCCTGAGGTTTGGGTTTAAGGTGACGGTGTTGGAAGGAAGGAAGCGAGCCGGGGGGCGGGTTTATACGAAGAAGATGGAGGGAGGGAATAGGATGTGTGCTGCTGCTGATTTGGGAGGGAGTGTGTTGACTGGTACATTGGGGAATCCACTTGGGATTGTGGCTAGGCAGTTGGGTGAGTTGCTTCATAAGGTGAGGGATAAATGCCCGCTTTATTGTGTGAACGGGATGCCGGTTGATCCGGATATGGATGTGAAGGTGGAGTCTGCGTTTAATCGGTTGCTTGATAAGGCGAGTAGGCTGAGGCAGCTGATGGGGGAGGTTTCGGTGGATGTGTCGCTCGGGGCTGCGCTGGAGACATTCAGTCAGGTTTATAAGGACGCAGTGAGTGATGAGGAAATGAATTTGTTTAATTGGCATCTCGCAAATTTGGAGTATGCGAATGCGGGGTTGTTGTCAAATCTTTCGCTTGCGTTTTGGGACCAGGATGATCCATATGATATGGGGGGAGACCATTGCTTTTTGCCTGGGGGAAATGGGAAGCTGGTTCAGGCTTTGTCAGAGAATGTGCCGATTTTGTATGAGAAGACTGTGCATATGATTAGGTATAGTGGCGATGGAGTGCAGGTGACTGCAGGGAGTCAGGTGTTTGAGGGTGATATGGCATTGTGCACGGTTCCATTAGGTGTGTTGAAGAAAGGGTTTATCAAGTTTATACCGGAGTTGCCTCAGAGGAAGCTTGATGGAATAAAGAGATTGGGGTTTGGTCTGCTGAATAAGGTTGCCATGCTTTTTCCTCATGTATTTTGGGAGATGGATCTTGACACATTTGGGCATCTTTCTGATGATCCAAGTCGTCGAGGGGAGTTTTTTTTGTTTTACAGTTATGTAACTGTTGCTGGTGGTCCCCTGTTGATTGCTTTGGTAGCAGGGGAAGCTGCGCATAAGTTTGAGAGCATGCCCCCGACAGATGCGGTCACACGGGTTCTCCAAATACTCAAGGGTATCTATGAACCAAAAGGAATCACTGTTCCTGAACCTATCCAAACCGTATGTACTAGATGGGGCAGTGATCCATTCTGCTTTGGTTCTTACTCTAATGTTGCAGTCGGAGCTTCTGGTGATGATTATGATATTTTAGCAGAAAGTGTGGGAGATGGTAGACTTTTCTTTGCTGGGGAAGCAACCACTAGGCGCTATCCTGCTACTATGCACGGGGCTTTCCTAAGTGGTCTAAGAGAAGCTGCTAATATGGCCCACCATGATAATATTCGAACACTGAAGATGAAAGTTGATAAGGCCCCTTCAAATGCTCATTCCTGTGCTTCCCTTCTTGCAGATTTATTTAGAGAACCTGATATAGAATTTGGGAGCTTTTCTGTCATTTTTGCTCGGAAGAATACAGACCCCAAGTCACCAGCAATCTTGAGGGTAACATTTAATGAGGCTAGAAAGAAATGTCATGAAGTTGCAAAACAGGACCAACAACACTCAAACAAATTACTTTTTCAGCAGCTTCAGTCACATTTTAATCAACAACAGCAGCTTCATGTTTACACTTTATTGTCAAGACAACAGGTTATTGACCTAAGAGAGGTAAGAGGTGGTGATGAAATGAGATTAAATTACCTTTGTGAAAAGCTAGGAGTGAAACTGGTTGGAAGAAAAGGATTGGGAATGAATGCTGATTCAATCATTGATTCCATTAAAGCTGAAAGGGGCAATCGTAAGCCCGTTTCAACCTCTCTGGCTCTTAAACCAGGGGTGTCGTCAAAGCTAAAGGCGGCGGGCATTATGAAGCGCAAGTTAGTCAGAAGGGCAAAAGTGGTGAGGAAAAGCAATGGGTCCATAAATGTGCGGAGTGCCATCAAAGTATCTGAAGAGGTTAAAATAACAAATCAAGTGCTTCCTGATGTACCTGTTTCAGGGAGCAATCAAAATGACTTGACAAATTCATAA

Predicted protein sequences of Glyma02g18610

Limit To All Plant Sequences

>Glyma02g18610.1   sequence type=predicted peptide   gene model=Glyma02g18610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPPLQFSSPQNPNPNPNHNVFLDPTSDSIPNLLQNPIHYLSFSVPKKRRRGRSQRNPASFRLPPLTTLPTAANPSPSASDEIIFINKEPKTEALIALTAGFPADSLTEEEIDAAVLPVIGGIEQVNYTLIRNHIIAKWRENVSNWVSKKTFLDYIPPHYHSLLDSAYNYLVSHGYINFGVASSIKERVPAEASRPAVIVVGAGLAGLAAARQLLRFGFKVTVLEGRKRAGGRVYTKKMEGGNRMCAAADLGGSVLTGTLGNPLGIVARQLGELLHKVRDKCPLYCVNGMPVDPDMDVKVESAFNRLLDKASRLRQLMGEVSVDVSLGAALETFSQVYKDAVSDEEMNLFNWHLANLEYANAGLLSNLSLAFWDQDDPYDMGGDHCFLPGGNGKLVQALSENVPILYEKTVHMIRYSGDGVQVTAGSQVFEGDMALCTVPLGVLKKGFIKFIPELPQRKLDGIKRLGFGLLNKVAMLFPHVFWEMDLDTFGHLSDDPSRRGEFFLFYSYVTVAGGPLLIALVAGEAAHKFESMPPTDAVTRVLQILKGIYEPKGITVPEPIQTVCTRWGSDPFCFGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFLSGLREAANMAHHDNIRTLKMKVDKAPSNAHSCASLLADLFREPDIEFGSFSVIFARKNTDPKSPAILRVTFNEARKKCHEVAKQDQQHSNKLLFQQLQSHFNQQQQLHVYTLLSRQQVIDLREVRGGDEMRLNYLCEKLGVKLVGRKGLGMNADSIIDSIKAERGNRKPVSTSLALKPGVSSKLKAAGIMKRKLVRRAKVVRKSNGSINVRSAIKVSEEVKITNQVLPDVPVSGSNQNDLTNS*

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