Glyma02g18260 - SoyBase

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Report for Sequence Feature Glyma02g18260

Feature Type:	gene_model
Chromosome:	Gm02
Start:	16871235
stop:	16872691
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g18260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39235	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:18268514-18269034 FORWARD LENGTH=86	SoyBase	E_val: 5.00E-33	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6T3S8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3S8_SOYBN	SoyBase	E_val: 2.00E-56	ISS
UniRef100_Q75GV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=3 Tax=Oryza sativa RepID=Q75GV2_ORYSJ	SoyBase	E_val: 1.00E-31	ISS

Expression Patterns of Glyma02g18260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g18260 not represented in the dataset	Glyma02g18260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g18260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g157900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g18260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g18260

Limit To All Plant Sequences

>Glyma02g18260.2   sequence type=transcript   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACGATCCCCCTGGTTTTGACGCCCTGTTTCGTGTTCTCGGGTTTTGTTTTTCTTTATCTTTCTCTCCACGCAATCATCGTTATTTAATCCTCTCTCCGACTCAAGAGGCGACCCACTTCGCTGCACGCCAAACATTGCACTGCGCGAAAAGCGTTTAATAAAGGTAACTAACTTTTGTTTGGAGTCTCAGTCTCAGAGTATGGACACTCAGAAAGGGCCGTCTTCATCGGCTGCAGCTGTTACTTCATGTCGAAAGAAGAAGAACGAAGAAGCCACTTTTTTGGAGGACTTGAAGGATCACATTGACGAGTTTATTAATGCTTCTATGGATGAACATAAGACTTGCTTCAAGAAAACAGTTCAGAAGATGTTCGGAATGTCCAAGGCTGTTGCAGAGAGGGACACCAATGCTGCCAAAGAAGTTGAGAGTTCTCTGCCTCTTCAGACAACTTTGCAAGACTAGTATCATGCTTGCTCTCAAGAAAAATAATGTTTGTTTTCTAGAAGCTCTTTTGGAGGATGTTGATAAAAATAAGTGAGTGATTAAGTTGGTTGGTCTTGATCCATGGGACTAGGTTGTTGTTGAATGTGTGATTTGCTTACATTTCTTAATGCTACACAACCCTAAGAAATCGATGGCCAGAGGTCTTAAGAAGCATTGAATTCGATGAAGGCAACAGACAGGTTGCATTAACATTATGGGTAGGGAAGGAAGGGTCTCCTTAGAGAGAGAAGCAAAAAATAAATAAATAAAAAATCAATCATTATTCAGGTATTAAAAACAAGTATAGTTACAAACTCCTTAATCACAATTTGAAGACATATTATCCTTTTTACGTATTTAAGATATAAACTATCAACTACTCTTATT

>Glyma02g18260.5   sequence type=transcript   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGTCTGGCTTGGTAGGTCACACAAGTTTAAACATTACATTCCTCTCAGAGTATGGACACTCAGAAAGGGCCGTCTTCATCGGCTGCAGCTGTTACTTCATGTCGAAAGAAGAAGAACGAAGAAGCCACTTTTTTGGAGGACTTGAAGGATCACATTGACGAGTTTATTAATGCTTCTATGGATGAACATAAGACTTGCTTCAAGAAAACAGTTCAGAAGATGTTCGGAATGTCCAAGGCTGTTGCAGAGAGGGACACCAATGCTGCCAAAGAAGTTGAGAGTTCTCTGCCTCTTCAGACAACTTTGCAAGACTAGTATCATGCTTGCTCTCAAGAAAAATAATGTTTGTTTTCTAGAAGCTCTTTTGGAGGATGTTGATAAAAATAAGTGAGTGATTAAGTTGGTTGGTCTTGATCCATGGGACTAGGTTGTTGTTGAATGTGTGATTTGCTTACATTTCTTAATGCTACACAACCCTAAGAAATCGATGGCCAGAGGTCTTAAGAAGCATTGAATTCGATGAAGGCAACAGACAGGTTGCATTAACATTATGGGTAGGGAAGGAAGGGTCTCCTTAGAGAGAGAAGCAAAAAATAAATAAATAAAAAATCAATCATTATTCAGGTATTAAAAACAAGTATAGTTACAAACTCCTTAATCACAATTTGAAGA

>Glyma02g18260.6   sequence type=transcript   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTCGCTGCACGCCAAACATTGCACTGCGCGAAAAGGTTTTCTCCCTCTGCTTCTATCATTTCCTTCATGTTGGGTATTTCATTCACTTTTTTTCCCCATCTTTTTTCGAATCCCTTTCTCTAAAAATTTTTAAATGATACAGTCTGGCTTGGTAGGTCACACAAGTTTAAACATTACATTCCGTAAGCGCCTTTTCTAAAATCTTCGATTACATTCTTTAGTTTTCTTTTGAGTATTTAAAGCCCTTAATTCAACCGCGACGAATTATGATGCTTACGAGGCAAATCGGTTTGTGCTAACGTGTTTGTATTTATAGATAGTGTCTCTCTTTGAGTCTCTGTAATGAATGTAATTCAGTTTGTCTATTAGATAATAAAAACAATTATTTCTTACCTATGACATGGTAACAAATAATAATAAAAAAAAATTATTGTTGTGTTTTAATCATTTGGTCTGGTTAACTAAGTTCCTTGATGTTCTGGGATGATGGCGATAATGTTTAACTAAGTTCCTTGATCATTTTACAGCGTTTAATAAAGGTAACTAACTTTTGTTTGGAGTCTCAGTCTCAGAGTATGGACACTCAGAAAGGGCCGTCTTCATCGGCTGCAGCTGTTACTTCATGTCGAAAGAAGAAGAACGAAGAAGCCACTTTTTTGGAGGACTTGAAGGATCACATTGACGAGTTTATTAATGCTTCTATGGATGAACATAAGACTTGCTTCAAGAAAACAGTTCAGAAGATGTTCGGAATGTCCAAGGCTGTTGCAGAGAGGGACACCAATGCTGCCAAAGAAGTTGAGAGTTCTCTGCCTCTTCAGACAACTTTGCAAGACTAGTATCATGCTTGCTCTCAAGAAAAATAATGTTTGTTTTCTAGAAGCTCTTTTGGAGGATGTTGATAAAAATAAGTGAGTGATTAAGTTGGTTGGTCTTGATCCATGGGACTAGGTTGTTGTTGAATGTGTGATTTGCTTACATTTCTTAATGCTACACAACCCTAAGAAATCGATGGCCAGAGGTCTTAAGAAGCATTGAATTCGATGAAGGCAACAGACAGGTTGCATTAACATTATGGGTAGGGAAGGAAGGGTCTCCTTAGAGAGAGAAGCAAAAAATAAATAAATAAAAAATCAATCATTATTCAGGTATTAAAAACAAGTATAGTTACAAACTCCTTAATCACAATTTGAAGACATATTATC

Coding sequences of Glyma02g18260

Limit To All Plant Sequences

>Glyma02g18260.1   sequence type=CDS   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTCAGAAAGGGCCGTCTTCATCGGCTGCAGCTGTTACTTCATGTCGAAAGAAGAAGAACGAAGAAGCCACTTTTTTGGAGGACTTGAAGGATCACATTGACGAGTTTATTAATGCTTCTATGGATGAACATAAGACTTGCTTCAAGAAAACAGTTCAGAAGATGTTCGGAATGTCCAAGGCTGTTGCAGAGAGGGACACCAATGCTGCCAAAGAAGTTGAGAGTTCTCTGCCTCTTCAGACAACTTTGCAAGACTAG

>Glyma02g18260.2   sequence type=CDS   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTCAGAAAGGGCCGTCTTCATCGGCTGCAGCTGTTACTTCATGTCGAAAGAAGAAGAACGAAGAAGCCACTTTTTTGGAGGACTTGAAGGATCACATTGACGAGTTTATTAATGCTTCTATGGATGAACATAAGACTTGCTTCAAGAAAACAGTTCAGAAGATGTTCGGAATGTCCAAGGCTGTTGCAGAGAGGGACACCAATGCTGCCAAAGAAGTTGAGAGTTCTCTGCCTCTTCAGACAACTTTGCAAGACTAG

>Glyma02g18260.5   sequence type=CDS   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTCAGAAAGGGCCGTCTTCATCGGCTGCAGCTGTTACTTCATGTCGAAAGAAGAAGAACGAAGAAGCCACTTTTTTGGAGGACTTGAAGGATCACATTGACGAGTTTATTAATGCTTCTATGGATGAACATAAGACTTGCTTCAAGAAAACAGTTCAGAAGATGTTCGGAATGTCCAAGGCTGTTGCAGAGAGGGACACCAATGCTGCCAAAGAAGTTGAGAGTTCTCTGCCTCTTCAGACAACTTTGCAAGACTAG

>Glyma02g18260.6   sequence type=CDS   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTCAGAAAGGGCCGTCTTCATCGGCTGCAGCTGTTACTTCATGTCGAAAGAAGAAGAACGAAGAAGCCACTTTTTTGGAGGACTTGAAGGATCACATTGACGAGTTTATTAATGCTTCTATGGATGAACATAAGACTTGCTTCAAGAAAACAGTTCAGAAGATGTTCGGAATGTCCAAGGCTGTTGCAGAGAGGGACACCAATGCTGCCAAAGAAGTTGAGAGTTCTCTGCCTCTTCAGACAACTTTGCAAGACTAG

Predicted protein sequences of Glyma02g18260

Limit To All Plant Sequences

>Glyma02g18260.1   sequence type=predicted peptide   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTQKGPSSSAAAVTSCRKKKNEEATFLEDLKDHIDEFINASMDEHKTCFKKTVQKMFGMSKAVAERDTNAAKEVESSLPLQTTLQD*

>Glyma02g18260.2   sequence type=predicted peptide   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTQKGPSSSAAAVTSCRKKKNEEATFLEDLKDHIDEFINASMDEHKTCFKKTVQKMFGMSKAVAERDTNAAKEVESSLPLQTTLQD*

>Glyma02g18260.5   sequence type=predicted peptide   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTQKGPSSSAAAVTSCRKKKNEEATFLEDLKDHIDEFINASMDEHKTCFKKTVQKMFGMSKAVAERDTNAAKEVESSLPLQTTLQD*

>Glyma02g18260.6   sequence type=predicted peptide   gene model=Glyma02g18260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTQKGPSSSAAAVTSCRKKKNEEATFLEDLKDHIDEFINASMDEHKTCFKKTVQKMFGMSKAVAERDTNAAKEVESSLPLQTTLQD*

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