Glyma02g18031 - SoyBase

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Report for Sequence Feature Glyma02g18031

Feature Type:	gene_model
Chromosome:	Gm02
Start:	16297136
stop:	16299249
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g18031

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29750	AT	Annotation by Michelle Graham. TAIR10: receptor-like kinase in flowers 1 \| chr1:10414071-10420469 REVERSE LENGTH=1021	SoyBase	E_val: 1.00E-53	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004702	GO-mf	Annotation by Michelle Graham. GO Molecular Function: receptor signaling protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_C6ZRM2	UniRef	Annotation by Michelle Graham. Best UniRef hit: ATP-binding/protein serine/threonine kinase n=1 Tax=Glycine max RepID=C6ZRM2_SOYBN	SoyBase	E_val: 1.00E-89	ISS
UniRef100_C6ZRM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-binding/protein serine/threonine kinase n=1 Tax=Glycine max RepID=C6ZRM2_SOYBN	SoyBase	E_val: 1.00E-89	ISS

Expression Patterns of Glyma02g18031

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g18031 not represented in the dataset	Glyma02g18031 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g18031 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g156400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g18031

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g18031

Limit To All Plant Sequences

>Glyma02g18031.1   sequence type=CDS   gene model=Glyma02g18031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTCTCGAGAGAGATGTCCAAGAGTCTCGATTTTCTTCTATAGATTTCTCTAAAAAGCTGCAAAGGGAATTTGCATTTGAACGATCTGAAATTCCTGCAGATTCTAAACCTTGTTCAGACCAAAAAAATGCAAGGCATAAGATAATCGTTGGAGTGGGATTTGGAGTTACAGCTCTATGCCTTGTCTTTATAATAGTTGGAATCTTTTGGTGGAAGGGCTACTTCAAACGAATAATTAGGACAATAAAAGGTACTGAAAGACAAGATTCACAGAAGGGGATATTTACGTTAAAACAAATTAGAGATGCCACATATGATTTCACTCCAGATAATATGATTGGAGAAGGTGGTTTTGGTCATGTCTACAAGGGTCAATTATCTGATGGAACATTGATAGCAGTCAAACAACTCTCATCAAAGTCACGGCAGGGAAATCGTGAATTCTTAAATGAGATAGGCATGATATCTTGTTTGCATCACCTTAATCTTGTGAAACTTCATGGATGTTGCATGGAAAGGGATCAATTGATATTGGTGTATGAGTACATGGAAAGTAATAGTTTGGCTCGTGCTTTATTCAGTGAGTTTCTACCCAAAGTGCAAACTATTGTATTTGTCTTTTACCTTGTCATCTAA

Predicted protein sequences of Glyma02g18031

Limit To All Plant Sequences

>Glyma02g18031.1   sequence type=predicted peptide   gene model=Glyma02g18031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSLERDVQESRFSSIDFSKKLQREFAFERSEIPADSKPCSDQKNARHKIIVGVGFGVTALCLVFIIVGIFWWKGYFKRIIRTIKGTERQDSQKGIFTLKQIRDATYDFTPDNMIGEGGFGHVYKGQLSDGTLIAVKQLSSKSRQGNREFLNEIGMISCLHHLNLVKLHGCCMERDQLILVYEYMESNSLARALFSEFLPKVQTIVFVFYLVI*

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