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Report for Sequence Feature Glyma02g18000

Feature Type:gene_model
Chromosome:Gm02
Start:16202717
stop:16205692
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g18000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73720AT Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr1:27725059-27729722 FORWARD LENGTH=511 SoyBaseE_val: 9.00E-80ISS
GO:0008380GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
PTHR22848Panther WD40 REPEAT PROTEIN JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_B9RE42UniRef Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RE42_RICCO SoyBaseE_val: 2.00E-85ISS
UniRef100_I1JFJ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JFJ6_SOYBN SoyBaseE_val: 7.00E-149ISS

Expression Patterns of Glyma02g18000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g18000 not represented in the dataset
Glyma02g18000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g18000 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g156300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g18000
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g18000
>Glyma02g18000.2   sequence type=CDS   gene model=Glyma02g18000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTATGATGATGTTGTGCTTTGTGCAGACTTTAGCAGAGATTCAAAAATGCTTGCATCTGGGTCTCAAGATGGAAAGATTAAAGTCTGGCGTTTTAGGACTAGTCAATGCTTGTGGCGTCTTGAACGTGCTCATTCTCAAGGTGTCACAAGTGTTTCCTTCTCTCGTGATGGAAGCCAGTTATTAAGCACTTCATTTGATAGAACAACAAGAGCACAACTCCTTGTTCAAATCTTCAATGCTTTATTACTGCAACATATTTTATATCTTAGCATTGTGAAATGCTTTAATAAAATGTTAGCAATTATGTTGAAAGAGTTCTGTGGCCATACATTGCATATGAATGATGCAATTTTTACAAATGATGGGAGTCATGTAATTATTGACTCAAGTGACTATACAATCAAGGTCTGGGATGTGCAGACTACAGACCATATACAAACTTTTAAGCCACCTCCACCTTTAAGGGGAGGTGATGCTTCTATCAATTATGTTCACATTTCCCCCAAGAATACTGATCACATTGTTGTTGTGAAGAGCTTCTCATCTGGTAAAAGAGAGAGTGAAGACTTTGTTGCCACCTGCGTTTCACCCAAAGGAGAATGGATTTATTTTGTTGGTGAAGACAAGTATCCTAATTTATGTATATAA
Predicted protein sequences of Glyma02g18000
>Glyma02g18000.2   sequence type=predicted peptide   gene model=Glyma02g18000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMYDDVVLCADFSRDSKMLASGSQDGKIKVWRFRTSQCLWRLERAHSQGVTSVSFSRDGSQLLSTSFDRTTRAQLLVQIFNALLLQHILYLSIVKCFNKMLAIMLKEFCGHTLHMNDAIFTNDGSHVIIDSSDYTIKVWDVQTTDHIQTFKPPPPLRGGDASINYVHISPKNTDHIVVVKSFSSGKRESEDFVATCVSPKGEWIYFVGEDKYPNLCI*






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