|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G27970 | AT | Annotation by Michelle Graham. TAIR10: nuclear transport factor 2B | chr1:9746921-9747787 FORWARD LENGTH=126 | SoyBase | E_val: 7.00E-38 | ISS |
GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
GO:0006862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide transport | SoyBase | N/A | ISS |
GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
GO:0015696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transport | SoyBase | N/A | ISS |
GO:0015802 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basic amino acid transport | SoyBase | N/A | ISS |
GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
GO:0043269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ion transport | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0008536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding | SoyBase | N/A | ISS |
GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
KOG2104 | KOG | Nuclear transport factor 2 | JGI | ISS | |
PTHR12612 | Panther | NUCLEAR TRANSPORT FACTOR 2 | JGI | ISS | |
PF02136 | PFAM | Nuclear transport factor 2 (NTF2) domain | JGI | ISS | |
UniRef100_B9RMD1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transport factor, putative n=1 Tax=Ricinus communis RepID=B9RMD1_RICCO | SoyBase | E_val: 2.00E-38 | ISS |
UniRef100_I1JFJ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFJ5_SOYBN | SoyBase | E_val: 8.00E-56 | ISS |
Glyma02g17980 not represented in the dataset |
Glyma02g17980 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.02g156200 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g17980.2 sequence type=CDS gene model=Glyma02g17980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCAAACGCGTTGGCAAAGGCATTCATGGAGCACTACTACAACACCTTCGACACCAGCCGGAGTGGTTTAGCTAATCTGTATCAGCAGAGTTCCATGCTTACCCTCAAAGGGCAGAAGATCCAGGGTGCTTCCAACATTGTTGCTAAGCTCACTTCCTTCCCTTTCCAGCAATGCCACCACTCCATCTCCAGCGTCAACTGTGGCAACCTCCAAATCACTGGCAAACAACACCCTCTCAAGTTAAGCCAGGTACTCTCCCTCTCTGTTAAGGAACCCTGTGAGAGTTGA
>Glyma02g17980.2 sequence type=predicted peptide gene model=Glyma02g17980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPNALAKAFMEHYYNTFDTSRSGLANLYQQSSMLTLKGQKIQGASNIVAKLTSFPFQQCHHSISSVNCGNLQITGKQHPLKLSQVLSLSVKEPCES*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||