Report for Sequence Feature Glyma02g17440
Feature Type: gene_model
Chromosome: Gm02
Start: 15717748
stop: 15718985
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g17440
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02870 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:637401-638603 REVERSE LENGTH=193
SoyBase E_val: 9.00E-67 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4771
KOG
Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis
JGI ISS
PF09420 PFAM
Ribosome biogenesis protein Nop16
JGI ISS
UniRef100_C6T026 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T026_SOYBN
SoyBase E_val: 7.00E-119 ISS
UniRef100_Q9SRY0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F22D16.13 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SRY0_ARATH
SoyBase E_val: 2.00E-22 ISS
Expression Patterns of Glyma02g17440
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g17440
Paralog Evidence Comments
Glyma10g02360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g17440 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g155400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g17440
Coding sequences of Glyma02g17440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g17440.1 sequence type=CDS gene model=Glyma02g17440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGGTCGAGAAGAAAGTACAAGCAATCGAGAACCAAGGTCCGTGTGGGACTCCCTAAGAAGAACCCTAGGCTTTTCAAACCCTCTTTCTCCGTTCCACCCAAGCTCTTGCGAACCCTCGCCGAAGAGCCCCAATGGGACGACCAAGGCACCGTTAACAGCAACTACTCCTCCTTCGGCGTTCTCTCCGACCCTAACTCCCTCACCGAGCCTTCTCCCGATCCTCAAACCTTCGATTCCGGCAGCGATCTCGAAGAAGACGACTTGAAATCAGCCCTAGGAAAGAAGCGAAGGGATGGGAGAAGCGCGCCGCCTCAGCCTCTGACTGCAATGCAACGGATTCATATTAGTCGCCTTGTCGATAAATACGGAAATGATTATCAGAGTATGTTGATGGATATAAAGCTGAATCCGATGCAGCATTCAATTGCAACTTTGCAGAAGCTATGCATGAGGTATCATATATACCAAAACAAGAACCCTCTCCTTAAGGCCAAATGA
Predicted protein sequences of Glyma02g17440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g17440.1 sequence type=predicted peptide gene model=Glyma02g17440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRSRRKYKQSRTKVRVGLPKKNPRLFKPSFSVPPKLLRTLAEEPQWDDQGTVNSNYSSFGVLSDPNSLTEPSPDPQTFDSGSDLEEDDLKSALGKKRRDGRSAPPQPLTAMQRIHISRLVDKYGNDYQSMLMDIKLNPMQHSIATLQKLCMRYHIYQNKNPLLKAK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
