Glyma02g17430 - SoyBase

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Report for Sequence Feature Glyma02g17430

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15711493
stop:	15714223
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g17430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27720	AT	Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein \| chr5:9815904-9817304 FORWARD LENGTH=129	SoyBase	E_val: 1.00E-62	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005732	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3293	KOG	Small nuclear ribonucleoprotein (snRNP)	JGI		ISS
PTHR23338	Panther	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	JGI		ISS
PF01423	PFAM	LSM domain	JGI		ISS
UniRef100_Q43582	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nicotiana tabacum RepID=LSM4_TOBAC	SoyBase	E_val: 1.00E-75	ISS
UniRef100_UPI0001890C4D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001890C4D related cluster n=1 Tax=unknown RepID=UPI0001890C4D	SoyBase	E_val: 2.00E-100	ISS

Expression Patterns of Glyma02g17430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g17430

Paralog	Evidence	Comments
Glyma10g02380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g17430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g155300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g17430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g17430

Limit To All Plant Sequences

>Glyma02g17430.2   sequence type=transcript   gene model=Glyma02g17430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATAAACGAAATAGGAGTAGAGTCGCCTAAGATTCAAAAAGGAAGTTGGAACACAAGAGAGGTCTGATTAATACTAGTTTTCTGTAAAATCGCAAAGAAACACACAGTTAGCACCGTCAACCTCTGCAACCACCGATTCCAACCATGCTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATGCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAAGATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTGATCGCAAACCCCCTGGTGTGGGACGTGGAAGGGGAAGAGGTAGGGATGATGGTCCTGGTGGACGTCAACCTAAAGGAATTGGGCGAGGTATTGATGAGGGTGGAGCTAAAGGACAAGGAGGACGAGGCCGGGGTGGTCCAGGTGGAAAACCCAGTGGAAACAGAGGGCGAGGTAGAGGTTGATTTGGGTGCTGATATGGAACTACAGATGGGCCAGTTGCTGCTTTTAGAGGCATTGGTGCCCATTCAAAACATTTAGTGTTTGTGTTATGTTTCCTGTGCATTATTTGATTTTAGGTTTCCAATTGTTTTCCTGCATTTATAGTCACAAAAATGGTGATATTATGGACCTCATAAAAAATCTTCTATGCCAACATCGTTTTCCAATGCCTTCTCTGTTGAAAACTTGCCTTTGTAATCCTTTTTCCTGAGGCTATGTTTAGATATCTAGTGATGAGTGAAATGAAATGGAAAGGAATCATGGGGTGGAATGAAATAAAATTAGCATTCTATTGTTTGGATAGTTTTATTGGAGGGGAAGGAATAGAATACAATGCATGCTTTCATTCCATCCTATTCTAATCCAAACTACCCAAATAATGGAACCTAGTCTTAATTCTTTTTCATTCCACTTTATTACATTCTTTTCCTTCAATTCAAACGTAGTATCGGGGAGAAGTAATCATGGTGGTACATGTTAATTGTTGAATAGTAAATACCTCCGAATCTTGCTAAGTTTTTAAATGTTATATTGAATCCGAAGTTTGTTTGTAC

Coding sequences of Glyma02g17430

Limit To All Plant Sequences

>Glyma02g17430.1   sequence type=CDS   gene model=Glyma02g17430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATGCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAAGATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTGATCGCAAACCCCCTGGTGTGGGACGTGGAAGGGGAAGAGGTAGGGATGATGGTCCTGGTGGACGTCAACCTAAAGGAATTGGGCGAGGTATTGATGAGGGTGGAGCTAAAGGACAAGGAGGACGAGGCCGGGGTGGTCCAGGTGGAAAACCCAGTGGAAACAGAGGTGCAGGGCGAGGTAGAGGTTGA

>Glyma02g17430.2   sequence type=CDS   gene model=Glyma02g17430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATGCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAAGATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTGATCGCAAACCCCCTGGTGTGGGACGTGGAAGGGGAAGAGGTAGGGATGATGGTCCTGGTGGACGTCAACCTAAAGGAATTGGGCGAGGTATTGATGAGGGTGGAGCTAAAGGACAAGGAGGACGAGGCCGGGGTGGTCCAGGTGGAAAACCCAGTGGAAACAGAGGGCGAGGTAGAGGTTGA

Predicted protein sequences of Glyma02g17430

Limit To All Plant Sequences

>Glyma02g17430.1   sequence type=predicted peptide   gene model=Glyma02g17430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGRDDGPGGRQPKGIGRGIDEGGAKGQGGRGRGGPGGKPSGNRGAGRGRG*

>Glyma02g17430.2   sequence type=predicted peptide   gene model=Glyma02g17430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGRDDGPGGRQPKGIGRGIDEGGAKGQGGRGRGGPGGKPSGNRGRGRG*

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