Report for Sequence Feature Glyma02g17360
Feature Type: gene_model
Chromosome: Gm02
Start: 15647015
stop: 15651184
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g17360
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G47750 AT
Annotation by Michelle Graham. TAIR10: putative indole-3-acetic acid-amido synthetase GH3.9 | chr2:19560307-19562974 REVERSE LENGTH=585
SoyBase E_val: 0 ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03321 PFAM
GH3 auxin-responsive promoter
JGI ISS
UniRef100_B9T0V7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetic acid-amido synthetase GH3.17, putative n=1 Tax=Ricinus communis RepID=B9T0V7_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JFH6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFH6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g17360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g17360
Paralog Evidence Comments
Glyma10g02440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g17360 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g154600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g17360
Coding sequences of Glyma02g17360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g17360.1 sequence type=CDS gene model=Glyma02g17360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGGAAAGAAGTTAGAGTACAAAGGTGAGGAAGCACTGAAGGAGATAGAGAGGTTGACAATGAAGGCTGCTGAAGTTCAAGAAGGCCTTTTGAAACAGATCTTAACTCAGAATAGGGAAACTGAGTATTTGAATAAGTATATGAGGGGAGAAAAAAATACAACGGACATAGCAGAGTTTAAGAGGTGTGTTCCAGTCACCACTTATGAAAGAATCTTCCCATATATCCAGAGGATTGCTAATGGGGAAGACTCTTCTCTCATCACTAGTCACCCAATAACAGAAATGTTATGCAGTTCAGGGACATCATCTGGAGAGCCTAAAATGATGCCATCAATTGCGGAAGATCTAGAACGCCGTACTTTTGTGTACAATCTTATCACGCCAATCATAAACCAGTACGTTCCTGATCTTGACGAGGGCAAGGCAATGTATCTGTACTTTGTAAAAGCAGAAATGTGCACTCCTTGCGGCTTACCAGCCAGAACAGTGTTAACAAGCTACTACAAGAGCAAGCACTTCAAGTGCCGCACGCACGACCCTTGGAACGATTACACAAGCCCCGACCAAAGCATTCTATGCAATGACAGCAACCAAAGCATGCATTGCCAGCTCCTAGCAGGTTTGGTTCACCGCCGCCACGTCCTAAGGCTCGGCGCCGTCTTTGCCTCCGCACTTCTGAGAGCCATTTCCTTCCTCGAACGAAACTGGAGGCACCTGTGTGAGGACATTTGCAGTGGCCAACTCAGTTCCTTCATAACAGACCCTTCATGCCGCTCCCGCATGTCCACATTCCTCTCTTCCCCTAACCCTCGTCTTGCTGATGAGATCACAAGAATCTGCAGCCAGAAGTCTTGGAAGGGAATTCTGTGCCAGCTTTGGCCTAAGGCCAAGTTCATAGAGGCTGTGGTTACTGGCTCCATGGCTCAGTATGTTCCTGCTCTTAAGCACTACAGTGAAGGGAAATTGCCTTTGGTTTGTACCATGTATGCTTCTTCTGAGTGCTACTTTGGGGTTAATCTGAAGCCTCTTTGTGATCCTAGTGATGTTGCTTTTACCCTCTTGCCTAACATGGGCTACTTTGAGTTCCTTCCTCTTAGACACAACGGGACGCTGTTGATGGATTTTGATGAAGGAGAGCAGGTTCCCAATGATAAGCTCGTGGATTTGGTGCATGTCAAGCTTGGTTGCTTTTATGAGCCTGTGGTCACTACTTTTGCTGGGCTGTACCGATACCGCGTTGGTGACGTGCTTCAGGTGGTGGGATTTTACAACAACGCCCCACAAGTCCGTTTCATCTGCAGGAGAAACGTTGTGATCAGCGTCGACACCGAAAAGACCAACGAGGAGGACTTGCACAGGGGCGTGACAATGGCAAAAAAATTGTTGGAGCCATACGATTCTCTCTTAGTGGAGTACACAAGCTACCCCGACACTTCTTCAGTACCAGGACATTACGTATTGTACTGGGAAATTCTTCATTGTGGGATAAAGACAGAATCATCACCACAACTTCAACTTGACGCAAACGTGCTTGAGGAATGTTGCATTGCGGTGGAAGAGCAATTGGACTACGTATATAGACGATGCCGTAGCTATGACAAGTCTGTGGGGCCACTTGAGATACGTGTGGTGGAGCCAGGAACGTTTGACGCGTTGATGGACTTGTTTATTTGCCAAGGAGCTTCCATCAATCAGTACAAGACTCCAAGGTGCATCAAGTCTAAGAAAGCACTCAAGTTACTCAAGTCTAAAGTTACAGCTTCTTTCTTCAGCCCTAGAGATCCCAAATGGGCCCCTAAGATGTGTTCAAGTTGA
Predicted protein sequences of Glyma02g17360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g17360.1 sequence type=predicted peptide gene model=Glyma02g17360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDGKKLEYKGEEALKEIERLTMKAAEVQEGLLKQILTQNRETEYLNKYMRGEKNTTDIAEFKRCVPVTTYERIFPYIQRIANGEDSSLITSHPITEMLCSSGTSSGEPKMMPSIAEDLERRTFVYNLITPIINQYVPDLDEGKAMYLYFVKAEMCTPCGLPARTVLTSYYKSKHFKCRTHDPWNDYTSPDQSILCNDSNQSMHCQLLAGLVHRRHVLRLGAVFASALLRAISFLERNWRHLCEDICSGQLSSFITDPSCRSRMSTFLSSPNPRLADEITRICSQKSWKGILCQLWPKAKFIEAVVTGSMAQYVPALKHYSEGKLPLVCTMYASSECYFGVNLKPLCDPSDVAFTLLPNMGYFEFLPLRHNGTLLMDFDEGEQVPNDKLVDLVHVKLGCFYEPVVTTFAGLYRYRVGDVLQVVGFYNNAPQVRFICRRNVVISVDTEKTNEEDLHRGVTMAKKLLEPYDSLLVEYTSYPDTSSVPGHYVLYWEILHCGIKTESSPQLQLDANVLEECCIAVEEQLDYVYRRCRSYDKSVGPLEIRVVEPGTFDALMDLFICQGASINQYKTPRCIKSKKALKLLKSKVTASFFSPRDPKWAPKMCSS*