Glyma02g17340 - SoyBase

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Report for Sequence Feature Glyma02g17340

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15632087
stop:	15633476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g17340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02920	AT	Annotation by Michelle Graham. TAIR10: glutathione S-transferase 7 \| chr1:658886-659705 REVERSE LENGTH=209	SoyBase	E_val: 3.00E-89	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0043295	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione binding	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG0867	KOG	Glutathione S-transferase	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF55	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_I1JFH5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JFH5_SOYBN	SoyBase	E_val: 2.00E-152	ISS
UniRef100_Q948X4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase n=1 Tax=Medicago sativa RepID=Q948X4_MEDSA	SoyBase	E_val: 3.00E-116	ISS

Expression Patterns of Glyma02g17340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g17340 not represented in the dataset	Glyma02g17340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g17340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g154400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g17340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g17340

Limit To All Plant Sequences

>Glyma02g17340.1   sequence type=CDS   gene model=Glyma02g17340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAATAAGACTTCATGGAAACCCCTTCTCAACAGCCACCATGCGAGCTGCTGCTTCCCTACACGAGAAGCAGCTTGAATTTGAGTTTGTTCTCATTGACATGAAAAATGGTGAACACAAAAAGGAACCCTTCATTTCCCTTAATCCTTTCGGTCAAGTTCCAGCCTTTGAAGATGGAGATTTGAAGCTCTTTGAATCAAGAGCAATAACTCAGTACATCGTTCACGAGTATGCTGATAAGGGGACTCAACTGATAAGCAAGGAGTCCAAGAAGATGGCAAAATTGAGGTTGTGGTTGGAAGTAGAGAGCCAACACTACGATCAACCAGCTTCAAAACTTGTATGGGAGCTCATGGTAAAGCCTATGTATGGTCTCCCTACGGATCCAGCAGCTGTGGAAGAGAATGAAGGGAAGCTAGGCACTGTTCTTGATTTCTACGAGAAAACATTGTCTCAGTCCAAATACGTGGCGGGTGAGTGTTTCACCTTGGCGGATCTGCATCACCTCCCAACGATTCATTACTTGATGAAAACACAGAGCAAGAAGTTGTTTGAATCACGACCCCATGTTGGTGCATGGGTGGCTGATATTACAGCAAGAACAGCTTGGTCTAAGGTCCTTGCCATGCAGCCTTTGCTAAGTAGTAAATAG

Predicted protein sequences of Glyma02g17340

Limit To All Plant Sequences

>Glyma02g17340.1   sequence type=predicted peptide   gene model=Glyma02g17340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATIRLHGNPFSTATMRAAASLHEKQLEFEFVLIDMKNGEHKKEPFISLNPFGQVPAFEDGDLKLFESRAITQYIVHEYADKGTQLISKESKKMAKLRLWLEVESQHYDQPASKLVWELMVKPMYGLPTDPAAVEENEGKLGTVLDFYEKTLSQSKYVAGECFTLADLHHLPTIHYLMKTQSKKLFESRPHVGAWVADITARTAWSKVLAMQPLLSSK*

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