Report for Sequence Feature Glyma02g17330
Feature Type: gene_model
Chromosome: Gm02
Start: 15629637
stop: 15631195
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g17330
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G62760 AT
Annotation by Michelle Graham. TAIR10: Glutathione S-transferase family protein | chr3:23217425-23218246 REVERSE LENGTH=219
SoyBase E_val: 2.00E-93 ISS
GO:0009407 GO-bp
Annotation by Michelle Graham. GO Biological Process: toxin catabolic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004364 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity
SoyBase N/A ISS
KOG0867
KOG
Glutathione S-transferase
JGI ISS
PTHR11260 Panther
GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING
JGI ISS
PTHR11260:SF55 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00043 PFAM
Glutathione S-transferase, C-terminal domain
JGI ISS
PF02798 PFAM
Glutathione S-transferase, N-terminal domain
JGI ISS
UniRef100_D2X9U0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phi class glutathione transferase GSTF3 n=2 Tax=Populus trichocarpa RepID=D2X9U0_POPTR
SoyBase E_val: 2.00E-116 ISS
UniRef100_I1JFH4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFH4_SOYBN
SoyBase E_val: 7.00E-162 ISS
Expression Patterns of Glyma02g17330
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g17330
Paralog Evidence Comments
Glyma10g02460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g17330 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g154300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g17330
Coding sequences of Glyma02g17330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g17330.1 sequence type=CDS gene model=Glyma02g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTTTAAGCTTTATGGTCTACCAATGTCCACAAACACTACCCGTGCCATGATCTGTCTCCATGAGAAAGAGGTGGATTTTGAACTTGTTCCAGTCAATGTGTTCGCTGCGGAGCATAAGCAGCCTCCTTTTCTCTCCAAGAATCCCTTTGGTTTGATTCCATTACTGGAAGATGGTGATCTCACTCTTTTTGAGTCCAGAGCCATTACCGCATATGTGGCTGAAAAATTCAAGGAAACAGGAGCCGATCTGATAAGGCATAAGGACGCAAAAGAAGCAGCACTGGTAAAGGTGTGGACAGAGGTAGAGTCTCATTACTACGAGCCAGCAGTGTCACCCATTATCTACGAGTACTTCGTGGCCCCTTTCCAAGGCAAAGAGCCCGACAAGTCAGTTATTGACACCAACGTTGAGAAGCTGAAGAAGGTGCTTGATGTGTACGAGGCCAAGCTGAGCAGCACCAAGTACCTTGCCGGGGACTTTTATAGCCTTGCTGATCTCAGCAATGTCTCTGAAACTCACTACCTTATGCAGACCCCTTGTGCTTCAACGGTCAATGAGCGTCCCCATGTAAAGGCTTGGTGGGAAGATATCTCTTCTAGGCCTGCTTTCACTAAGGTTGTGGGAGGAATGACTTTTGGTCAGAATCAGGAAGAATGA
Predicted protein sequences of Glyma02g17330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g17330.1 sequence type=predicted peptide gene model=Glyma02g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAFKLYGLPMSTNTTRAMICLHEKEVDFELVPVNVFAAEHKQPPFLSKNPFGLIPLLEDGDLTLFESRAITAYVAEKFKETGADLIRHKDAKEAALVKVWTEVESHYYEPAVSPIIYEYFVAPFQGKEPDKSVIDTNVEKLKKVLDVYEAKLSSTKYLAGDFYSLADLSNVSETHYLMQTPCASTVNERPHVKAWWEDISSRPAFTKVVGGMTFGQNQEE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
