SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G47810 | AT | Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B5 | chr2:19582938-19583420 REVERSE LENGTH=160 | SoyBase | E_val: 4.00E-60 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG0869 | KOG | CCAAT-binding factor, subunit A (HAP3) | JGI | ISS | |
| PTHR11064 | Panther | TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN | JGI | ISS | |
| PTHR11064:SF9 | Panther | CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A | JGI | ISS | |
| PF00808 | PFAM | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | JGI | ISS | |
| UniRef100_I3TAW4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit B6 n=1 Tax=Medicago truncatula RepID=I3TAW4_MEDTR | SoyBase | E_val: 6.00E-70 | ISS |
| UniRef100_UPI00005B0D3E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00005B0D3E related cluster n=1 Tax=unknown RepID=UPI00005B0D3E | SoyBase | E_val: 4.00E-105 | ISS |
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Glyma02g17310 not represented in the dataset |
Glyma02g17310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g02480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g154000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g17310.1 sequence type=CDS gene model=Glyma02g17310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGACAACAACATAGGCAAAGTCTTAGAGAGAGAAGGCTTTAAGTACAACTTCACGGCAGCTGCAAGTGACACCTCTGCACAAGATGAGGTGATTAAAGAGCAAGATCGGTTGCTTCCAATAGCAAATGTGGGGCGCATCATGAAGCAAATCCTTCCTCCTAACGCCAAGATCTCAAAGGAAGCTAAAGAAACCATGCAAGAATGTGTGTCCGAGTTCATTAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTGAATGGCGACGATATTTGCTGGGCCCTTGCTACCCTAGGGTTTGATGACTACTCTGAGCCACTTAAAAGGTACTTGCATAAGTATAGGGAGTTCGAAGGGGAGAGAGCAAATCAAAATAAGGGTAACAACAACACTTATGAAAACAACATTGCAAACATATAA
>Glyma02g17310.1 sequence type=predicted peptide gene model=Glyma02g17310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDNNIGKVLEREGFKYNFTAAASDTSAQDEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLHKYREFEGERANQNKGNNNTYENNIANI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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