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Report for Sequence Feature Glyma02g17260

Feature Type:gene_model
Chromosome:Gm02
Start:15577134
stop:15581286
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47850AT Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:19595953-19598119 FORWARD LENGTH=468 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1677 KOG CCCH-type Zn-finger protein JGI ISS
PTHR12506Panther PROTEIN PHOSPHATASE RELATED JGI ISS
PTHR12506:SF11Panther ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN JGI ISS
PF00642PFAM Zinc finger C-x8-C-x5-C-x3-H type (and similar) JGI ISS
UniRef100_B9S3U9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3U9_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JFH1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFH1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g02550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g153700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g17260.2   sequence type=transcript   gene model=Glyma02g17260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCTACTATATATATAGAGAGAGAAAACACAAATACTCACCAAACCAAACCCATTAAACCTACACACTCTCTTTTACAGTGAAAGTGTGAGAAAAACCCGTGTCTCTCTCTCGGGTTCGCAACGAGGAGACAACACCGGAGCTCTCCGATCTTCCAGAACATTCTAGAGTGGCAACGGGATTCATTCTTCGCTTCAAACTTTAAACACCCAAACACTAACCCATCTCCATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGAACAATTGGATACACGACAGAACAAGTTATTCCTCTTGAATTCAGGTAGCCCTGCATGGATTTCAGATGCAACACCGTATCCAGTTGTGCACACTTGTGAGTTGTGACTACAATGCATGTGCAAATACAATCGTTCACGATGGAGTTAGCCACATGTAGCAGCAGTCATTATAGCTTATCAAATCATATATTTGTTTTTCCTCTCACTGGCTCTTGGAGTTCAGTGGCTGATTAAAGGATTTATATTATTTGTTTGAAGCATTAATTTTATGTGGAAGGATTAATTGTTCTTAAGCACATTCTCATGTTTTGTTGC

>Glyma02g17260.3   sequence type=transcript   gene model=Glyma02g17260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGCAACACAGTGAACAACCGCATCAAACACCGTACAGTCCTACTATATATATAGAGAGAGAAAACACAAATACTCACCAAACCAAACCCATTAAACCTACACACTCTCTTTTACAGTGAAAGTGTGAGAAAAACCCGTGTCTCTCTCTCGGGTTCGCAACGAGGAGACAACACCGGAGCTCTCCGATCTTCCAGAACATTCTAGAGTGGCAACGGGATTCATTCTTCGCTTCAAACTTTAAACACCCAAACACTAACCCATCTCCATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGTTGCACTAGGGTCAACATGGGCAGCAGTCAATCTGGAGTAAGAGATAATGTACAACTTTTACTTTGCACAATTGCAGAGTCGGTCCTTGACAGCACATGATTGATTTTACACACACATGCCATCCACACAAGAGACTTTTGGTCATTGAAGTCCTCATTTCATGTCAAAAATCAACCTTCCAAAAAGCTTGTGACACCCACATACACAGTCCTAATGTAAAACCATCCATTTACTCTATTTTTATTTTCAAGTTAATATGATATTAATGTGATTTTCTGTGTTACTTATATGTCTAAAATTTGAATAGTTAAGACATTTCCATTTCCAAGTATGAATGCCAATATAGTGATGATGTATTTGATGTTAAATTTGTAGCACAGTAGTTTCAATTCTATCTTGAGTTTTGCATGTTTGATGTTGCATTACGTTTGGGGGAAATATGAGATGAAAACATAGTATCTGAACCGGGGCTACAGCAGAAAGGATTTGGTTTCATTATTGCATTGCAAGTAAATTTTGATCATGGTCAACTATTTTTCTGCTTATTGAGGAAAAATGCTATTTAACAGAACAATTGGATACACGACAGAACAAGTTATTCCTCTTGAATTCAGGTAGCCCTGCATGGATTTCAGATGCAACACCGTATCCAGTTGTGCACACTTGTGAGTTGTGACTACAATGCATGTGCAAATACAATCGTTCACGATGGAGTTAGCCACATGTAGCAGCAGTCATTATAGCTTATCAAATCATATATTTGTTTTTCCTCTCACTGGCTCTTGGAGTTCAGTGGCTGATTAAAGGATTTATATTATTTGTTTGAAGCATTAATTTTATGTGGAAGGATTAATTGTTCTTAAGCACATTCTCATGTTTTGTTGCAGCATTGCAATTTGTGTTGTTTTATTTTGGGATTTTTTCTTAATAAATTTGTTTTCTAGAAAACAGGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGATCTATGCGATACAGTCCATCGGCATCTTCTCTCATCGATGTGCCAGTCACTCCATACCCAGTTGGGTCTTTGCTGTCTCAGTTGGCTCCTTCAACAACGTCTTCAGACCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTTCTGGAAATAGTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTAATGCCCCTCCAAACAGTAGCAGAAGCACCAGACAAAGCGGTGAAATACGTTGACCTGACTCGTACAAACTTGAAAATAAGTCCTCGTTATATATTGGATGTGATTTCACAAGCCTTCATTACTTCTGTCTATAGTCCTCAGTATTTTGATGGCAACTGTTCAAAGTTTCTCTATCGCTGTTGAGAATTCATCGTCCAATTCTGTTTAGAAGCCATACTAGGTCATTATTCTCTTTTATGCTTATGCTCACCCCATCTGATTATATTATTATCTCAAATAAGCTTCAATAGAAAACTTCATATTGTCTATTCGTTCTCTCTTCTGAATATTATTATTATACCTTTATTTAAGGCGTTTGTGTGATTATATTATCATTACATTTCTAAATGTTTGAGACAGAGCCTAGTTCATACTCTTTACAAGAGGGCATAAGTTCCAGTTTTGCTACTGGTTTTTAGTACTTGCCATTTTCCCCATACTTAACTGGCTTATA

>Glyma02g17260.1   sequence type=CDS   gene model=Glyma02g17260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGATCTATGCGATACAGTCCATCGGCATCTTCTCTCATCGATGTGCCAGTCACTCCATACCCAGTTGGGTCTTTGCTGTCTCAGTTGGCTCCTTCAACAACGTCTTCAGACCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTTCTGGAAATAGTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTAATGCCCCTCCAAACAGTAGCAGAAGCACCAGACAAAGCGGTGAAATACGTTGA

>Glyma02g17260.2   sequence type=CDS   gene model=Glyma02g17260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGAACAATTGGATACACGACAGAACAAGTTATTCCTCTTGA

>Glyma02g17260.3   sequence type=CDS   gene model=Glyma02g17260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGTTGCACTAG

>Glyma02g17260.1   sequence type=predicted peptide   gene model=Glyma02g17260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLYGRSPARNGPNPVNQPEWSSPGTDTALEESMWHLTLGGGESYPERSGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTDPSRSNPKEQLYPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPGLQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSDLRPELMSGSKKESFSARIPSSGNSSGTSVGLIFSQGGSVSLSDVQLSSQSNAPPNSSRSTRQSGEIR*

>Glyma02g17260.2   sequence type=predicted peptide   gene model=Glyma02g17260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLYGRSPARNGPNPVNQPEWSSPGTDTALEESMWHLTLGGGESYPERSGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTDPSRSNPKEQLYPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPNNWIHDRTSYSS*

>Glyma02g17260.3   sequence type=predicted peptide   gene model=Glyma02g17260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLYGRSPARNGPNPVNQPEWSSPGTDTALEESMWHLTLGGGESYPERSGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTDPSRSNPKEQLYPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPLH*







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