Report for Sequence Feature Glyma02g17260
Feature Type: gene_model
Chromosome: Gm02
Start: 15577134
stop: 15581286
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g17260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G47850 AT
Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:19595953-19598119 FORWARD LENGTH=468
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1677
KOG
CCCH-type Zn-finger protein
JGI ISS
PTHR12506 Panther
PROTEIN PHOSPHATASE RELATED
JGI ISS
PTHR12506:SF11 Panther
ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN
JGI ISS
PF00642 PFAM
Zinc finger C-x8-C-x5-C-x3-H type (and similar)
JGI ISS
UniRef100_B9S3U9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3U9_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JFH1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFH1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g17260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g17260
Paralog Evidence Comments
Glyma10g02550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g17260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g153700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g17260
Transcripts of Glyma02g17260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g17260.2 sequence type=transcript gene model=Glyma02g17260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTCCTACTATATATATAGAGAGAGAAAACACAAATACTCACCAAACCAAACCCATTAAACCTACACACTCTCTTTTACAGTGAAAGTGTGAGAAAAACCCGTGTCTCTCTCTCGGGTTCGCAACGAGGAGACAACACCGGAGCTCTCCGATCTTCCAGAACATTCTAGAGTGGCAACGGGATTCATTCTTCGCTTCAAACTTTAAACACCCAAACACTAACCCATCTCCATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGAACAATTGGATACACGACAGAACAAGTTATTCCTCTTGAATTCAGGTAGCCCTGCATGGATTTCAGATGCAACACCGTATCCAGTTGTGCACACTTGTGAGTTGTGACTACAATGCATGTGCAAATACAATCGTTCACGATGGAGTTAGCCACATGTAGCAGCAGTCATTATAGCTTATCAAATCATATATTTGTTTTTCCTCTCACTGGCTCTTGGAGTTCAGTGGCTGATTAAAGGATTTATATTATTTGTTTGAAGCATTAATTTTATGTGGAAGGATTAATTGTTCTTAAGCACATTCTCATGTTTTGTTGC
>Glyma02g17260.3 sequence type=transcript gene model=Glyma02g17260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AGCGCAACACAGTGAACAACCGCATCAAACACCGTACAGTCCTACTATATATATAGAGAGAGAAAACACAAATACTCACCAAACCAAACCCATTAAACCTACACACTCTCTTTTACAGTGAAAGTGTGAGAAAAACCCGTGTCTCTCTCTCGGGTTCGCAACGAGGAGACAACACCGGAGCTCTCCGATCTTCCAGAACATTCTAGAGTGGCAACGGGATTCATTCTTCGCTTCAAACTTTAAACACCCAAACACTAACCCATCTCCATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGTTGCACTAGGGTCAACATGGGCAGCAGTCAATCTGGAGTAAGAGATAATGTACAACTTTTACTTTGCACAATTGCAGAGTCGGTCCTTGACAGCACATGATTGATTTTACACACACATGCCATCCACACAAGAGACTTTTGGTCATTGAAGTCCTCATTTCATGTCAAAAATCAACCTTCCAAAAAGCTTGTGACACCCACATACACAGTCCTAATGTAAAACCATCCATTTACTCTATTTTTATTTTCAAGTTAATATGATATTAATGTGATTTTCTGTGTTACTTATATGTCTAAAATTTGAATAGTTAAGACATTTCCATTTCCAAGTATGAATGCCAATATAGTGATGATGTATTTGATGTTAAATTTGTAGCACAGTAGTTTCAATTCTATCTTGAGTTTTGCATGTTTGATGTTGCATTACGTTTGGGGGAAATATGAGATGAAAACATAGTATCTGAACCGGGGCTACAGCAGAAAGGATTTGGTTTCATTATTGCATTGCAAGTAAATTTTGATCATGGTCAACTATTTTTCTGCTTATTGAGGAAAAATGCTATTTAACAGAACAATTGGATACACGACAGAACAAGTTATTCCTCTTGAATTCAGGTAGCCCTGCATGGATTTCAGATGCAACACCGTATCCAGTTGTGCACACTTGTGAGTTGTGACTACAATGCATGTGCAAATACAATCGTTCACGATGGAGTTAGCCACATGTAGCAGCAGTCATTATAGCTTATCAAATCATATATTTGTTTTTCCTCTCACTGGCTCTTGGAGTTCAGTGGCTGATTAAAGGATTTATATTATTTGTTTGAAGCATTAATTTTATGTGGAAGGATTAATTGTTCTTAAGCACATTCTCATGTTTTGTTGCAGCATTGCAATTTGTGTTGTTTTATTTTGGGATTTTTTCTTAATAAATTTGTTTTCTAGAAAACAGGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGATCTATGCGATACAGTCCATCGGCATCTTCTCTCATCGATGTGCCAGTCACTCCATACCCAGTTGGGTCTTTGCTGTCTCAGTTGGCTCCTTCAACAACGTCTTCAGACCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTTCTGGAAATAGTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTAATGCCCCTCCAAACAGTAGCAGAAGCACCAGACAAAGCGGTGAAATACGTTGACCTGACTCGTACAAACTTGAAAATAAGTCCTCGTTATATATTGGATGTGATTTCACAAGCCTTCATTACTTCTGTCTATAGTCCTCAGTATTTTGATGGCAACTGTTCAAAGTTTCTCTATCGCTGTTGAGAATTCATCGTCCAATTCTGTTTAGAAGCCATACTAGGTCATTATTCTCTTTTATGCTTATGCTCACCCCATCTGATTATATTATTATCTCAAATAAGCTTCAATAGAAAACTTCATATTGTCTATTCGTTCTCTCTTCTGAATATTATTATTATACCTTTATTTAAGGCGTTTGTGTGATTATATTATCATTACATTTCTAAATGTTTGAGACAGAGCCTAGTTCATACTCTTTACAAGAGGGCATAAGTTCCAGTTTTGCTACTGGTTTTTAGTACTTGCCATTTTCCCCATACTTAACTGGCTTATA
Coding sequences of Glyma02g17260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g17260.1 sequence type=CDS gene model=Glyma02g17260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGATCTATGCGATACAGTCCATCGGCATCTTCTCTCATCGATGTGCCAGTCACTCCATACCCAGTTGGGTCTTTGCTGTCTCAGTTGGCTCCTTCAACAACGTCTTCAGACCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTTCTGGAAATAGTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTAATGCCCCTCCAAACAGTAGCAGAAGCACCAGACAAAGCGGTGAAATACGTTGA
>Glyma02g17260.2 sequence type=CDS gene model=Glyma02g17260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGAACAATTGGATACACGACAGAACAAGTTATTCCTCTTGA
>Glyma02g17260.3 sequence type=CDS gene model=Glyma02g17260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACTTGTACGGTCGGAGCCCTGCCAGAAATGGACCCAACCCGGTGAACCAACCCGAATGGAGCTCACCGGGCACCGACACTGCTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGCGAATCTTACCCGGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTACGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCGGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCCAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATTTCCGGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATACACACCGCTGCCCTCTACCACTGACCCTTCAAGAAGCAACCCGAAGGAACAATTATATCCCGAAAGACCGGGTGAACCCGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGCGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTGGGACTTCCTTTACGTCCGTTGCACTAG
Predicted protein sequences of Glyma02g17260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g17260.1 sequence type=predicted peptide gene model=Glyma02g17260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDLYGRSPARNGPNPVNQPEWSSPGTDTALEESMWHLTLGGGESYPERSGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTDPSRSNPKEQLYPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPGLQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSDLRPELMSGSKKESFSARIPSSGNSSGTSVGLIFSQGGSVSLSDVQLSSQSNAPPNSSRSTRQSGEIR*
>Glyma02g17260.2 sequence type=predicted peptide gene model=Glyma02g17260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDLYGRSPARNGPNPVNQPEWSSPGTDTALEESMWHLTLGGGESYPERSGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTDPSRSNPKEQLYPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPNNWIHDRTSYSS*
>Glyma02g17260.3 sequence type=predicted peptide gene model=Glyma02g17260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDLYGRSPARNGPNPVNQPEWSSPGTDTALEESMWHLTLGGGESYPERSGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTDPSRSNPKEQLYPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPLH*