Glyma02g17240 - SoyBase

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Report for Sequence Feature Glyma02g17240

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15559443
stop:	15564843
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g17240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03010	AT	Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein \| chr1:693480-696188 FORWARD LENGTH=634	SoyBase	E_val: 0	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
PTHR13690	Panther	KELCH-RELATED	JGI		ISS
PTHR13690:SF174	Panther	KELCH-RELATED	JGI		ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
PF03000	PFAM	NPH3 family	JGI		ISS
UniRef100_E9NZU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NPH3 family protein n=1 Tax=Phaseolus vulgaris RepID=E9NZU3_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336F23	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336F23 related cluster n=1 Tax=unknown RepID=UPI0002336F23	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g17240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g17240

Paralog	Evidence	Comments
Glyma10g02560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g17240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g153500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g17240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g17240

Limit To All Plant Sequences

>Glyma02g17240.1   sequence type=CDS   gene model=Glyma02g17240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTGTCACTGTTGGAGAATTGAAGCCTAGCATCTCAGGGAAGAGGACCTTTCGTCCAAGCTCAAGCATAAGGCATGCCACTGAATGGCCAATATCTGATGTCTCTAGTGATCTCACCATCGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGGATTCGGAAAATGTTGTTAGAAACAAAAGATTCAAAAGTTTCACGCATAAGTCTCCCAAACTTGCCAGGTGGTGCAGAGGCATTTGAGCTGGCTGCCAAATTCTGTTATGGAATCAATGTGGAGTTCAGTCTCTCCAATGTTGCCATGCTAAAATGTGTAGCTCATTTTCTAAAAATGACAGAAGAGTTTGCAGACAAAAACTTGGAGACGCGAGCCGAAGCATATCTAAAGGAGACAGTGCTCCCAAATATATCAAACACAATATCTGTTCTTCACCGTTGTGAATCTCTTGTTCCCATTTCAGAAGAGATTAGCCTTGTCAGCAGACTAATCAATGCAATTGCAAACAATGCATGCAAAGAACAGCTCACCACTGGTTTGCAAAAACTGGACCACAGCTTCCCTTCTAAAACCACCTCAAACATGGAACCTGAAACACCCTCAGAATGGTGGGGGAAATCTCTCAATGTTCTTAGTCTTGATTTCTTTCAAAGAGTTTTGTCTGCAGTGAAGTCAAAGGGATTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCACATAATTCCCTTCAAGGGATTGTTAGGGACCACCAAGCAGTGAAAGGATGTTTTCCCGACTTGGAATTACAAAAGAAACAAAGAGTCATTGTTGAAGCCATTGCTGGCTTACTACCAACTCAATCAAGGAAAAGCCTGGTTCCTATGGCATTTCTCTCAAGTTTGTTGAAAGCTGCAATATCTGCATCAGCATCCACTTCATGCAGATCTGATTTGGAGAGAAGGATTGGTCTACAACTTGACCAGGCTATTCTTGAAGACATCCTAATCCCAACAAATTCACATCAAAACACACATGGGACTATTTATGACACGGATTCAATTTTGAGGATTTTTTCCAATTTTCTGAACTTGGATGAGGAGGATGAAGATGATAATAGTCACCTGAGAGATGAAAGTGAAATGGTTTATGACTTTGACAGCCCCGGATCTCCAAAACAAAGCTCAATTCTGAAGGTATCCAAATTAATGGACAACTATCTAGCTGAAGTAGCACTAGACCCAAACTTGTTGCCATCAAAGTTCATATCCCTTGCTGAACTACTTCCAGATCATGCACGTATTGTGAGTGATGGACTCTATAGAGCCATTGATATATTCCTTAAGGTTCATCCAAACATAAAGGACTCAGAACGGTACCGGCTATGCAAAACCATTGATTGCCAGAAAATGTCTCAAGAGGCATGCAGCCATGCAGCACAAAATGAAAGGTTACCAGTGCAGATGGCAGTTCAGGTTCTATACTTTGAGCAAATAAGGCTCCGCAATGCCATGAGTGGAGGGCACAGCCATGTCTTCTTTGGAGGAGGAGCAGGACTTAATGGTCAATTCCCTCAACGCTCAGGGAGTGGTGCAGGAAGTGGAGCCATTTCCCCTAGAGACAACTATGCATCAGTGAGAAGGGAGAACCGTGAGCTGAAGCTAGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGATCATGTTAACATGAAGCAGGAGCTAGTAAAGTCCCACCCTGCCAACAAGCTATTCAAATCATTCACCAAAAAACTAAGCAAGCTCAATGCTATGTTTCGGATTAACAGTATCAAGCCAAATGGTTCTGAGAGTCGCTTTCCTTTTCCTAAGAGAAGGCGTCACTCAGTTTCATGA

Predicted protein sequences of Glyma02g17240

Limit To All Plant Sequences

>Glyma02g17240.1   sequence type=predicted peptide   gene model=Glyma02g17240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVTVGELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKMLLETKDSKVSRISLPNLPGGAEAFELAAKFCYGINVEFSLSNVAMLKCVAHFLKMTEEFADKNLETRAEAYLKETVLPNISNTISVLHRCESLVPISEEISLVSRLINAIANNACKEQLTTGLQKLDHSFPSKTTSNMEPETPSEWWGKSLNVLSLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGIVRDHQAVKGCFPDLELQKKQRVIVEAIAGLLPTQSRKSLVPMAFLSSLLKAAISASASTSCRSDLERRIGLQLDQAILEDILIPTNSHQNTHGTIYDTDSILRIFSNFLNLDEEDEDDNSHLRDESEMVYDFDSPGSPKQSSILKVSKLMDNYLAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAIDIFLKVHPNIKDSERYRLCKTIDCQKMSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHSHVFFGGGAGLNGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVNMKQELVKSHPANKLFKSFTKKLSKLNAMFRINSIKPNGSESRFPFPKRRRHSVS*

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