Glyma02g17120 - SoyBase

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Report for Sequence Feature Glyma02g17120

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15435373
stop:	15438616
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g17120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03120	AT	Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein \| chr4:1385747-1387331 FORWARD LENGTH=207	SoyBase	E_val: 4.00E-48	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3454	KOG	U1 snRNP-specific protein C	JGI		ISS
PF06220	PFAM	U1 zinc finger	JGI		ISS
UniRef100_F6HQ26	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U1 small nuclear ribonucleoprotein C n=1 Tax=Vitis vinifera RepID=RU1C_VITVI	SoyBase	E_val: 2.00E-82	ISS
UniRef100_I1JFF6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFF6_SOYBN	SoyBase	E_val: 3.00E-142	ISS

Expression Patterns of Glyma02g17120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g17120

Paralog	Evidence	Comments
Glyma10g02680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g17120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g152300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g17120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g17120

Limit To All Plant Sequences

>Glyma02g17120.4   sequence type=transcript   gene model=Glyma02g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAAATATAATTTAGAAAAAAAAGGAAGCATGAGTATAATTTACTCAATAAAAAAATTACGATGAAATAAGCGCATAAATAATAAAAAATTACGATGAAATAAGCGCATAAATAATTAGCTCTGGTGAGTGGCAATGGAATCCAGAAACTTGGGCAGACTGGGCATAGCATCCACGCTTTAATCGACCACTGCTTCTTCTACTTTTCTTTCCTCAAGGTTTTGGCGGGAGTCGTCGTCGTCATTGAATCAGCCATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACCTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCAGCGTTTCAGCAGGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAAGCCAACCACTAATGCCAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACCTACCATGCCTCCAATGTTACCTCCACCTGGTGCTCCCCAGGCACCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAGCAGTTCCTGGAAGCACTGCTGCTCCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCATCATCTGGAAGTTATGATAATTACAATGCCAGTGCTCAAGCACCTGAGGGTAATCACTGACCTGGTTGAACTGGTCACTCTGCATAATCTTATCTCCATTAGAGTCTTATGGCTAGAGCTATTTGTGCTCTCCCTACCAGCTGTTCATCAAATTAGGACTCTCCATTTGTGATCATATATAGAGTAATCATTGGTATGTAGCATGTCCAGCAGCTTGAATGCAAGAAATTTTTTATGTGTTATGTTTTTGGTCCCAGATGACAGATTTATATCTAAGTGCCAATTACTAGAACTTTTTTATTTTGACATGACTTGCTGATGATAGGTTCTATTCTGCAATTAATTTGTTTTTAATCTGAGTTTTATTAGTGATAAATGTAGATTTGGGAAAAAAAATCATAATTTCATATCATGTGTTATTGGATTTGAGTTCCCTAACAAAAGCATTGCATGTTTAATCAAGAACAAAAGTGCATTGATGTCTTGATTTCAAATTATGTATTTTGATATTGTTGTAACTTTTTATATTGATTATGCTTTCATTATTGTGATTAAGTTATTAGGAAATAATATTTCCCC

Coding sequences of Glyma02g17120

Limit To All Plant Sequences

>Glyma02g17120.3   sequence type=CDS   gene model=Glyma02g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACCTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCAGCGTTTCAGCAGGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAAGCCAACCACTAATGCCAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACCTACCATGCCTCCAATGTTACCTCCACCTGGTGCTCCCCAGGCACCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAGCAGTTCCTGGAAGCACTGCTGCTCCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCATCATCTGGAAGTTATGATAATTACAATGCCAGTGCTCAAGCACCTGAGGGTAATCACTGA

>Glyma02g17120.4   sequence type=CDS   gene model=Glyma02g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACCTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCAGCGTTTCAGCAGGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAAGCCAACCACTAATGCCAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACCTACCATGCCTCCAATGTTACCTCCACCTGGTGCTCCCCAGGCACCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAGCAGTTCCTGGAAGCACTGCTGCTCCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCATCATCTGGAAGTTATGATAATTACAATGCCAGTGCTCAAGCACCTGAGGGTAATCACTGA

Predicted protein sequences of Glyma02g17120

Limit To All Plant Sequences

>Glyma02g17120.3   sequence type=predicted peptide   gene model=Glyma02g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGSQPLMPGMRPPVFPRPPGAPGYVSAPTMPPMLPPPGAPQAPGQLNTIPRPPSLAPPPAVPGSTAAPASNGAPSMVSSAMYQANPPAPSSGSYDNYNASAQAPEGNH*

>Glyma02g17120.4   sequence type=predicted peptide   gene model=Glyma02g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGSQPLMPGMRPPVFPRPPGAPGYVSAPTMPPMLPPPGAPQAPGQLNTIPRPPSLAPPPAVPGSTAAPASNGAPSMVSSAMYQANPPAPSSGSYDNYNASAQAPEGNH*

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