Glyma02g17070 - SoyBase

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Report for Sequence Feature Glyma02g17070

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15399057
stop:	15402384
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g17070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03100	AT	Annotation by Michelle Graham. TAIR10: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain \| chr4:1374361-1375913 FORWARD LENGTH=430	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR23177	Panther	MKIAA1688 PROTEIN	JGI		ISS
PTHR23177:SF2	Panther	GTPASE ACTIVATING PROTEIN	JGI		ISS
PF00620	PFAM	RhoGAP domain	JGI		ISS
PF00786	PFAM	P21-Rho-binding domain	JGI		ISS
UniRef100_B9S3Y4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gtpase activating protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D683	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D683 related cluster n=1 Tax=unknown RepID=UPI000233D683	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g17070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g17070

Paralog	Evidence	Comments
Glyma10g02720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g17070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g151800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g17070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g17070

Limit To All Plant Sequences

>Glyma02g17070.3   sequence type=transcript   gene model=Glyma02g17070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCTCTTCTTCTTTCTAAAAAAACGCATTTTTTTTTTTCGTGGGAACTTCTCTTCTTCTTAGATTTCAAATGGGTTCTGCTTGAAATGCTAAAATACCTTCTTTTTTTCTTTGCTTGGAAGAGCTTTTGGTGTTGATGTTTATGTTTCTCTGTGTGTGTGGAAGAGAAAGAAAGTGTAAGATTTTCATGAAGGGTAGTGATTAGTGAAGAGATGCTGTGCCCAGAACTTCTTCTATGTGTCTAATGAATGTGTTCACGCAATAATGTTTCAAACTAGTGCATTCGGTGTAAGCGTGTTTGGGGTCTCAGCAGAATCTATGCAGTGTTCTTATGATCCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAGGCTGAAGGTATATTTCGTATTAACCCTGAAAATAGTCAAGAGGAGCATGTGAGGGACCAGTTGAATAGGGGCATTGTGCCGGATGACATTGATGTCCACTGTTTGGCTGGACTGATTAAAGCCTGGTTCCGAGAGCTACCTTCCGGAGTGCTAGATGGACTTTCCCCAGTGCAAGTTCTTCAGTGCAACACAGAAGAAGAATCTGTTGAGCTTGTGAAACAACTAAAGCCAACTGAGTCTGCCTTACTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAACTTAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCACCAAACATGACTCAGATGTCTGATCCTCTAACTGCCCTGATGCATGCGGTTCAAGTGATGAACTTACTCAAGACACTTATCATGAAGACACTTAGAGAACGCGAAGAAACAGCAACAGGTGGCTATTCTCCGATGTCATATCATTCATCAGATCGTCAGTCTGAGGATGAATACGACAGTCAGCGAGAAATGGACACAAGCGGTGAATTGAGAGGGACCAAATCAGACTATGATGATCGTGCTCACAATGGTCACAGCAGTGAAGGGGAGGCTGAATCTTTAAGCGAGATAGAGGATTGCTTCTTGAAGCAGTTGGATGAAAACACAGAAGGATTCTCAGAAGAACCTGCATATCATTTGGACAAGTATGTTAGCACCAGAAGTTGCTCTGGCTATAGCATAGAACCTTTTATATCTACTACTGATGGAAAAGCAGGAAATTCCTGCTTGAAGACAACACTGACCAGTCTGACCTCAAATGCTGACTCAAGTAACTCATCAATAGAATGTACCGGCACCAAAGATGTGGAGATGATGGATAAATTTGCAGATTCCATTTCAACCGTGCCACCACTCCTTGCTTCTAGTTAAGAACTGGTTTTCTTTGTAGTTTTTTAGTACCATGTTTTTCAGATTTTGTCTCTACAAGCAGCAGCAGGTTTGCTTGTGTAAATTAATACATGGAGTAGGAATCGTTTCCTTCTTGTGTATCTGTGGACAGGTTTTGTTCAGTTTAGGGCTGAATTTGACCTGGTTCTGTATGTTCTTGTACTAGACAATTCTAACCATGACAAATGGGAATGGGCTAAAAAGGTGTAGCCACCACTTCAAATTTCAGGTAAGTGCTGTGAAATCGATGAACCTGCGGAATGGGGAGATTGATTTAGCTTAGCCTGACATGACATGGATGCTTTCTATGTATCTTGTTGAGTATGATCAAAATTTGAATGGTTCAGAAATTTATCAAGATGGAAGGAAGTGTTTGAATGGTT

Coding sequences of Glyma02g17070

Limit To All Plant Sequences

>Glyma02g17070.2   sequence type=CDS   gene model=Glyma02g17070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGGAGTGGTCATGGTTACCAAGGGAGGTGGATGCGGCGGCGGCAAGCGGGCGAGGGCGGCGCGAACCGCCGAGGAGGAAGAAGAGCAGCAGAACCAGCTGTCGCTGGTGGCGCTTCTGTTGGCGGCCATCAGAAAATCGATGGTGTCGTGCAGGGTGGACCCACCCGACGATGTAATCTCCACCGTCCATCACATGGAGATCGGATGGCCAACCAACGTCCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGCTTCCTCGGTCTCCCCTATGAGTTCCAAGTTGAGATCCCTGCTAGGGTTCCCAGTGCTAGTGTAAGCGTGTTTGGGGTCTCAGCAGAATCTATGCAGTGTTCTTATGATCCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAGGCTGAAGGTATATTTCGTATTAACCCTGAAAATAGTCAAGAGGAGCATGTGAGGGACCAGTTGAATAGGGGCATTGTGCCGGATGACATTGATGTCCACTGTTTGGCTGGACTGATTAAAGCCTGGTTCCGAGAGCTACCTTCCGGAGTGCTAGATGGACTTTCCCCAGTGCAAGTTCTTCAGTGCAACACAGAAGAAGAATCTGTTGAGCTTGTGAAACAACTAAAGCCAACTGAGTCTGCCTTACTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAACTTAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCACCAAACATGACTCAGATGTCTGATCCTCTAACTGCCCTGATGCATGCGGTTCAAGTGATGAACTTACTCAAGACACTTATCATGAAGACACTTAGAGAACGCGAAGAAACAGCAACAGGTGGCTATTCTCCGATGTCATATCATTCATCAGATCGTCAGTCTGAGGATGAATACGACAGTCAGCGAGAAATGGACACAAGCGGTGAATTGAGAGGGACCAAATCAGACTATGATGATCGTGCTCACAATGGTCACAGCAGTGAAGGGGAGGCTGAATCTTTAAGCGAGATAGAGGATTGCTTCTTGAAGCAGTTGGATGAAAACACAGAAGGATTCTCAGAAGAACCTGCATATCATTTGGACAAGTATGTTAGCACCAGAAGTTGCTCTGGCTATAGCATAGAACCTTTTATATCTACTACTGATGGAAAAGCAGGAAATTCCTGCTTGAAGACAACACTGACCAGTCTGACCTCAAATGCTGACTCAAGTAACTCATCAATAGAATGTACCGGCACCAAAGATGTGGAGATGATGGATAAATTTGCAGATTCCATTTCAACCGTGCCACCACTCCTTGCTTCTAGTTAA

>Glyma02g17070.3   sequence type=CDS   gene model=Glyma02g17070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAAACTAGTGCATTCGGTGTAAGCGTGTTTGGGGTCTCAGCAGAATCTATGCAGTGTTCTTATGATCCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAGGCTGAAGGTATATTTCGTATTAACCCTGAAAATAGTCAAGAGGAGCATGTGAGGGACCAGTTGAATAGGGGCATTGTGCCGGATGACATTGATGTCCACTGTTTGGCTGGACTGATTAAAGCCTGGTTCCGAGAGCTACCTTCCGGAGTGCTAGATGGACTTTCCCCAGTGCAAGTTCTTCAGTGCAACACAGAAGAAGAATCTGTTGAGCTTGTGAAACAACTAAAGCCAACTGAGTCTGCCTTACTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAACTTAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCACCAAACATGACTCAGATGTCTGATCCTCTAACTGCCCTGATGCATGCGGTTCAAGTGATGAACTTACTCAAGACACTTATCATGAAGACACTTAGAGAACGCGAAGAAACAGCAACAGGTGGCTATTCTCCGATGTCATATCATTCATCAGATCGTCAGTCTGAGGATGAATACGACAGTCAGCGAGAAATGGACACAAGCGGTGAATTGAGAGGGACCAAATCAGACTATGATGATCGTGCTCACAATGGTCACAGCAGTGAAGGGGAGGCTGAATCTTTAAGCGAGATAGAGGATTGCTTCTTGAAGCAGTTGGATGAAAACACAGAAGGATTCTCAGAAGAACCTGCATATCATTTGGACAAGTATGTTAGCACCAGAAGTTGCTCTGGCTATAGCATAGAACCTTTTATATCTACTACTGATGGAAAAGCAGGAAATTCCTGCTTGAAGACAACACTGACCAGTCTGACCTCAAATGCTGACTCAAGTAACTCATCAATAGAATGTACCGGCACCAAAGATGTGGAGATGATGGATAAATTTGCAGATTCCATTTCAACCGTGCCACCACTCCTTGCTTCTAGTTAA

Predicted protein sequences of Glyma02g17070

Limit To All Plant Sequences

>Glyma02g17070.2   sequence type=predicted peptide   gene model=Glyma02g17070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGVVMVTKGGGCGGGKRARAARTAEEEEEQQNQLSLVALLLAAIRKSMVSCRVDPPDDVISTVHHMEIGWPTNVQHITHVTFDRFNGFLGLPYEFQVEIPARVPSASVSVFGVSAESMQCSYDPKGNSVPTILLLMQDRLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPVQVLQCNTEEESVELVKQLKPTESALLSWAIDLMADVVEEEELNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPMSYHSSDRQSEDEYDSQREMDTSGELRGTKSDYDDRAHNGHSSEGEAESLSEIEDCFLKQLDENTEGFSEEPAYHLDKYVSTRSCSGYSIEPFISTTDGKAGNSCLKTTLTSLTSNADSSNSSIECTGTKDVEMMDKFADSISTVPPLLASS*

>Glyma02g17070.3   sequence type=predicted peptide   gene model=Glyma02g17070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQTSAFGVSVFGVSAESMQCSYDPKGNSVPTILLLMQDRLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPVQVLQCNTEEESVELVKQLKPTESALLSWAIDLMADVVEEEELNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPMSYHSSDRQSEDEYDSQREMDTSGELRGTKSDYDDRAHNGHSSEGEAESLSEIEDCFLKQLDENTEGFSEEPAYHLDKYVSTRSCSGYSIEPFISTTDGKAGNSCLKTTLTSLTSNADSSNSSIECTGTKDVEMMDKFADSISTVPPLLASS*

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