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Report for Sequence Feature Glyma02g17060

Feature Type:gene_model
Chromosome:Gm02
Start:15389182
stop:15391225
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g17060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05260AT Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326 SoyBaseE_val: 3.00E-118ISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009269GO-bp Annotation by Michelle Graham. GO Biological Process: response to desiccation SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0010054GO-bp Annotation by Michelle Graham. GO Biological Process: trichoblast differentiation SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0004601GO-mf Annotation by Michelle Graham. GO Molecular Function: peroxidase activity SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
PF00141PFAM Peroxidase JGI ISS
UniRef100_G8A179UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase n=3 Tax=Medicago truncatula RepID=G8A179_MEDTR SoyBaseE_val: 5.00E-177ISS
UniRef100_I1JFF0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFF0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g17060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g17060
ParalogEvidenceComments
Glyma10g02730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g17060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g151700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g17060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g17060
>Glyma02g17060.1   sequence type=CDS   gene model=Glyma02g17060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATCAATATTTTGCTATGTGTGGTGCTTTTGGGTTTCCTTGGGGTTTGTCAAGGAGGCAGCCTAAGGAAAAAGTTCTACAAGGATTCCTGCTCTCAAGCTGAGGACATTATTAAGAGCAAAACCCAGCAGCATGTGTCTGCTAATCCCGATTTGCCTGCCAAGTTGCTTAGAATGCATTTTCATGATTGTTTTGTCAGGGGTTGTGATGCCTCGGTTTTGTTGAACTCTACTGCCAATAACACTGCTGAGAGGGATGCAATTCCAAATTTATCTTTGGCTGGCTTTGATGTCATAGATGACATAAAAAGTGAATTGGAGGCAAAATGTCCCAAAACTGTATCTTGTGCTGACATACTGGCATTGGCAGCTAGGGACGCTGTTTCCGTCCAATTTAATAAATCTATGTGGGAAGTGCTGACCGGTAGAAGAGATGGCACGGTATCGAACAGTAACGAAGCCTTGGCCAATATCCCTGCACCTTTCTTCAACTTCACCCAACTCAAACAAAACTTTGCTAGCAAAGGTCTCACTTTGCACGATCTGGTTGTATTATCAGGGGCACACACAATTGGAATAGGGCATTGCAACTTGTTCAGTAACAGGCTTTACAATTTCACCGGGAAAGGTGATCAAGACCCTTCTTTGAACTCCACTTATGCAGAATTCTTGAAGACAAAGTGCCAGAGCCTGAGCGATACAACCACAACGGTAGAAATGGATCCTGGAAGCTCTACCAATTTCGATAGTGACTATTATCCAAACCTTCTCCAGAATAAGGGTCTGTTCCAATCAGATGCAGCCCTTCTAACAGAAGAGCAATCTGAAGATATAGCTAAAGAATTGGTTGATCAAGACAAGTTCTTCACAGAATTTGCACAGTCAATGAAGAGAATGGGAGCCATTGATGTCCTCACTGACTCGGCAGGAGAAATACGGAACAAGTGTTCAGTTGTCAACTCATAA
Predicted protein sequences of Glyma02g17060
>Glyma02g17060.1   sequence type=predicted peptide   gene model=Glyma02g17060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKINILLCVVLLGFLGVCQGGSLRKKFYKDSCSQAEDIIKSKTQQHVSANPDLPAKLLRMHFHDCFVRGCDASVLLNSTANNTAERDAIPNLSLAGFDVIDDIKSELEAKCPKTVSCADILALAARDAVSVQFNKSMWEVLTGRRDGTVSNSNEALANIPAPFFNFTQLKQNFASKGLTLHDLVVLSGAHTIGIGHCNLFSNRLYNFTGKGDQDPSLNSTYAEFLKTKCQSLSDTTTTVEMDPGSSTNFDSDYYPNLLQNKGLFQSDAALLTEEQSEDIAKELVDQDKFFTEFAQSMKRMGAIDVLTDSAGEIRNKCSVVNS*






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