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Report for Sequence Feature Glyma02g17050

Feature Type:gene_model
Chromosome:Gm02
Start:15383416
stop:15385011
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g17050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47990AT Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr2:19637010-19638602 REVERSE LENGTH=530 SoyBaseE_val: 0ISS
GO:0000741GO-bp Annotation by Michelle Graham. GO Biological Process: karyogamy SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009561GO-bp Annotation by Michelle Graham. GO Biological Process: megagametogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG0310 KOG Conserved WD40 repeat-containing protein JGI ISS
PTHR19924Panther FAMILY NOT NAMED JGI ISS
PTHR19924:SF3Panther gb def: unknown protein [arabidopsis thaliana] JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
PF09384PFAM UTP15 C terminal JGI ISS
UniRef100_G7I2U5UniRef Annotation by Michelle Graham. Most informative UniRef hit: U3 small nucleolar RNA-associated protein-like protein n=2 Tax=Medicago truncatula RepID=G7I2U5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0001D62DC0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001D62DC0 related cluster n=1 Tax=unknown RepID=UPI0001D62DC0 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g17050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g17050
ParalogEvidenceComments
Glyma10g02745 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g17050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g151500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g17050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g17050
>Glyma02g17050.1   sequence type=CDS   gene model=Glyma02g17050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGCAAGAGTTCAGAAGAACTTCCCGGTGAAGCCGAAGCTGAAATCGATGGCCAGAACCCCAAAGCAAACCCCTGAATCGAAGTACTGGTCCTCCTTCAAGACCCAACAAATCCCCAACCTCATCTCCGTCCCCTCCCTCACCTTCTCCCCCACACCCCCTCACTCCTTCGCCGCCGCACACTCCGCCTCCCTCACTCTTTACAGCTCCCAGACCCTCTCCCCCGCTGCCACCATCTCCTCCTTCTCCGACGCCGTCTCCTGCGCCTCCTTCCGCTCCGACTCCCGCCTCCTGGCCGCCTCCGACCTCTCCGGCCTTGTCCAGGTCTTCGACGTCAAATCCCGCACCGCCCTCCGCCGCCTCAAGTCTCATTTCCGCCCCGTCCGCTTCGTCCACTTCCCCCGCCTCGACAAGCTCCACCTCATCTCTGCCGGCGACGACGCCCTCGTCAAGCTCTGGGACGTCGCCGAGGAGACCCCGGTCTCCGAGTTCCTCGGCCACAAGGACTATGTCAGGTGCGGAGACTCCTCCCCTGTGAATTCTGAAATCTTCGTTACAGGCTCCTATGACCATGTCGTCAGGCTCTGGGATGCTAGGGTTAGGGATTCGAAATCGTCGGTGCAGGTGAACCACGGCGCGCCCGTGGAGGATGTTGTGTTCTTGCCGTCCGGAGGGATGGTTGCGACGGCGGGTGGGAATTCGGTTAAAATTTGGGACTTGATTGGTGGAGGGAAGCTTGTGTACTCCATGGAGAGTCACAACAAGACTGTCACGTCGATTTGTGTCGGGAGAATTGGGAAGGATTATGGTGAAGAATCATCGAATCAGTTTAGGATTATGAGTGTGGGGTTGGATGGGTACTTGAAGGTGTTTGATTATGGATCATTGAAGGTTACACATTCCATGAGGTTCCCCGCGCCTCTTTTGTCGGTCGCCTACTCGCCAGATTGTTCCACCAGGGTGATTGGGACATCCAATGGAGTGATCTATGCTAGCAAGAGGAAGATGAAGGAAAAAGAGAAGGAGGAGGAGGAGAGTGAGGCTAGCTTGGTTTGGAGAACTGCTCCTGTGGAGAATACTGAGAAGAAAGCGGTGAGGCCTTCGCATTTTAGGTATTTTCATAGAGGGCAGGGAACCAAACCGTCTGAGGGGGATTTCTTGGTTATGAAGCCCAAGAAGAAGAAGTGGGCTAAGCACGACACGCTGTTGAACAAGTTTGAGCATGGAGAGGCTCTGGTGTCTGTGTTGGGAACTATGAACCCTGGGCATGTGGTGGCTGTGATGGAGGAATTGGTGGCTAGGAAGAAATTTCTCAAGTGTGTCTCCAACTTGGATGTGGAGAAGTTGGAACTGCTCTTGGAATTCTTGCATAAGTATTGTACCATGCCTAGATATTCTAGTTTGTTGATGGGGTTCGCCAAGAAGGTTCTTGAAATGAGGGCGGATGATATTAGAGCTTCTGATTCTGAAGCCATCAAGAGTCATATCATAAATCTCAAGCGGGCTGTTGCCCAGGAGATTCAGATTCAACAGTCATTGCAAGAGATACAGGGTATAATTTCTCCTTTGTTGAAGATTGCTGGAAGATGA
Predicted protein sequences of Glyma02g17050
>Glyma02g17050.1   sequence type=predicted peptide   gene model=Glyma02g17050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEARVQKNFPVKPKLKSMARTPKQTPESKYWSSFKTQQIPNLISVPSLTFSPTPPHSFAAAHSASLTLYSSQTLSPAATISSFSDAVSCASFRSDSRLLAASDLSGLVQVFDVKSRTALRRLKSHFRPVRFVHFPRLDKLHLISAGDDALVKLWDVAEETPVSEFLGHKDYVRCGDSSPVNSEIFVTGSYDHVVRLWDARVRDSKSSVQVNHGAPVEDVVFLPSGGMVATAGGNSVKIWDLIGGGKLVYSMESHNKTVTSICVGRIGKDYGEESSNQFRIMSVGLDGYLKVFDYGSLKVTHSMRFPAPLLSVAYSPDCSTRVIGTSNGVIYASKRKMKEKEKEEEESEASLVWRTAPVENTEKKAVRPSHFRYFHRGQGTKPSEGDFLVMKPKKKKWAKHDTLLNKFEHGEALVSVLGTMNPGHVVAVMEELVARKKFLKCVSNLDVEKLELLLEFLHKYCTMPRYSSLLMGFAKKVLEMRADDIRASDSEAIKSHIINLKRAVAQEIQIQQSLQEIQGIISPLLKIAGR*






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