Glyma02g16980 - SoyBase

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Report for Sequence Feature Glyma02g16980

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15324069
stop:	15327750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03430	AT	Annotation by Michelle Graham. TAIR10: histidine-containing phosphotransfer factor 5 \| chr1:848159-849235 FORWARD LENGTH=157	SoyBase	E_val: 2.00E-57	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of seed germination	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0031537	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0048831	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of shoot development	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0080036	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0009927	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity	SoyBase	N/A	ISS
GO:0043424	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding	SoyBase	N/A	ISS
KOG4747	KOG	Two-component phosphorelay intermediate involved in MAP kinase cascade regulation	JGI		ISS
PF01627	PFAM	Hpt domain	JGI		ISS
UniRef100_G7I2T8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histidine phosphotransfer protein n=1 Tax=Medicago truncatula RepID=G7I2T8_MEDTR	SoyBase	E_val: 3.00E-80	ISS
UniRef100_I1JFE3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFE3_SOYBN	SoyBase	E_val: 4.00E-107	ISS

Proteins Associated with Glyma02g16980

Locus	Gene Symbol	Protein Name
	HP09	Ubiquitous, Phosphotransfer Protein

Expression Patterns of Glyma02g16980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g16980 not represented in the dataset	Glyma02g16980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16980

Paralog	Evidence	Comments
Glyma10g02820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g150800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16980

Limit To All Plant Sequences

>Glyma02g16980.2   sequence type=transcript   gene model=Glyma02g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGACTGCAAGGTCATTTTCCGGAAACAAAACTTAACCCCCCCGCTTTTTCTCTTTTTTAATAAAACGATTAAAGTTGTAATTTTTATAAGTAATAAGGTCAAAACCCTGATGATTATTACTGGTATTTTCAAGTTGTAATGTTGTTTTGGGGGAAATGTCTGATATGTTGTTTTTTGTTGGCGGGGAGAAAGGGTTTTTTGGATGATCAGTTCAGCCAGCTTCAGAAACTGCAAGATGAGAGCACTCCAGATTTTGTGATTGAGGTTATCACTATGTTCTTTGATGATTCTGAGAATCTCCTAAAAAACATGGCACGTTGTCTAGAACAAGTGCCAGCTGATTTCAAACAAATAGATGCTCATGCTCATCAGTACAAGGGAAGCAGTGCCAGTATTGGTGCTGCTAGAGTTAAAAATGTGTGCGCCACCTTCAGAGCTTTTTGTGAGGCTAAGAACCAGGAAGGATGTATGAGATGTCTATCACAGTTGCAACAGGAGTACTCTCTACTGAAGAACGCTCTACAGTACTTATTCAGTCTGCAGCAACAAATCAAGGCTGCTGGTGGTTCCATTCCCACACAATAGAGTAGATGAGTGATAAAAAAGTGAAGCTTTTGATGGAGCTGCTGATTTTGTTCTTTTTTTTATCTTTTCCTGGATTACTCGTTCAGAATTACGTCCAAGGTTTGAACGATGGATTATGGTGCTGATATGATGAATAAACATTTCTTGCCTAGTTTGTCGCATACATACATGATATTATATTATTCTTCTCCACTAAACTGTTGTTAAGTTTGAAGTTTCCCATGTTTACTCGTTAGGGTGATAATGTTTATCGTTCACTCATTTGTTAAAGTAAATGCGTATATTTGTAGTGTTTAGCTCTTTGAACTCTTCTGTTCACTTCAAAGAATTTATTTGGAAAGTGTGGAATTAATAGCCCTTCAACTGTAAGAGATATGTTTGTAAGGTTATTAGTTTGAAAACAGCGGTACGCAAATTCTTGTACTATTTTATTTTTTTTGTCCTGCTCATAGGTGTGCTTAGGACATTAATTAAGAAATTAATGGAGAAAGTATTTATTGTGGAAATTATG

Coding sequences of Glyma02g16980

Limit To All Plant Sequences

>Glyma02g16980.1   sequence type=CDS   gene model=Glyma02g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATGGATGTCGCTCAGCTGCAGAGGAAGCTGCGCGAACACCAAGCCGCTATGTTTCAACAGGGTTTTTTGGATGATCAGTTCAGCCAGCTTCAGAAACTGCAAGATGAGAGCACTCCAGATTTTGTGATTGAGGTTATCACTATGTTCTTTGATGATTCTGAGAATCTCCTAAAAAACATGGCACGTTGTCTAGAACAAGTGCCAGCTGATTTCAAACAAATAGATGCTCATGCTCATCAGTACAAGGGAAGCAGTGCCAGTATTGGTGCTGCTAGAGTTAAAAATGTGTGCGCCACCTTCAGAGCTTTTTGTGAGGCTAAGAACCAGGAAGGATGTATGAGATGTCTATCACAGTTGCAACAGGAGTACTCTCTACTGAAGAACGCTCTACAGTACTTATTCAGTCTGCAGCAACAAATCAAGGCTGCTGGTGGTTCCATTCCCACACAATAG

>Glyma02g16980.2   sequence type=CDS   gene model=Glyma02g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTTTGGGGGAAATGTCTGATATGTTGTTTTTTGTTGGCGGGGAGAAAGGGTTTTTTGGATGATCAGTTCAGCCAGCTTCAGAAACTGCAAGATGAGAGCACTCCAGATTTTGTGATTGAGGTTATCACTATGTTCTTTGATGATTCTGAGAATCTCCTAAAAAACATGGCACGTTGTCTAGAACAAGTGCCAGCTGATTTCAAACAAATAGATGCTCATGCTCATCAGTACAAGGGAAGCAGTGCCAGTATTGGTGCTGCTAGAGTTAAAAATGTGTGCGCCACCTTCAGAGCTTTTTGTGAGGCTAAGAACCAGGAAGGATGTATGAGATGTCTATCACAGTTGCAACAGGAGTACTCTCTACTGAAGAACGCTCTACAGTACTTATTCAGTCTGCAGCAACAAATCAAGGCTGCTGGTGGTTCCATTCCCACACAATAG

Predicted protein sequences of Glyma02g16980

Limit To All Plant Sequences

>Glyma02g16980.1   sequence type=predicted peptide   gene model=Glyma02g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMDVAQLQRKLREHQAAMFQQGFLDDQFSQLQKLQDESTPDFVIEVITMFFDDSENLLKNMARCLEQVPADFKQIDAHAHQYKGSSASIGAARVKNVCATFRAFCEAKNQEGCMRCLSQLQQEYSLLKNALQYLFSLQQQIKAAGGSIPTQ*

>Glyma02g16980.2   sequence type=predicted peptide   gene model=Glyma02g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFWGKCLICCFLLAGRKGFLDDQFSQLQKLQDESTPDFVIEVITMFFDDSENLLKNMARCLEQVPADFKQIDAHAHQYKGSSASIGAARVKNVCATFRAFCEAKNQEGCMRCLSQLQQEYSLLKNALQYLFSLQQQIKAAGGSIPTQ*

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