Glyma02g16880 - SoyBase

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Report for Sequence Feature Glyma02g16880

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15220001
stop:	15221899
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03350	AT	Annotation by Michelle Graham. TAIR10: BSD domain-containing protein \| chr1:822834-824246 REVERSE LENGTH=470	SoyBase	E_val: 2.00E-117	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2690	KOG	Uncharacterized conserved protein, contains BSD domain	JGI		ISS
PTHR16019	Panther	SYNAPSE-ASSOCIATED PROTEIN	JGI		ISS
PTHR16019:SF4	Panther	gb def: expressed protein [arabidopsis thaliana]	JGI		ISS
PF03909	PFAM	BSD domain	JGI		ISS
UniRef100_G7I2W6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BSD domain-containing protein n=1 Tax=Medicago truncatula RepID=G7I2W6_MEDTR	SoyBase	E_val: 3.00E-163	ISS
UniRef100_I1JFD2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFD2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16880

Paralog	Evidence	Comments
Glyma10g02890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g150000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g16880

Limit To All Plant Sequences

>Glyma02g16880.1   sequence type=CDS   gene model=Glyma02g16880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATCTTCAAATCCGTTTTTTCCGAAGACCCGGATCCTCCACGACCCGGATCCAACCATGCATCGCCAGACAAAGCACCGGATCCCCATTCCCCGCCCCGATCGAATGCCACCGAGTCCGCTGCCGGAGGAGGCGGCGGCGACGGTTGGAACTTCGGCGGCCTCATCAAAACCCTTACATCGAAATCGGAATCCATAATTGAGACCTACCGTCGCGATCTGCAGGAATTCGGCACCGGTTTGAAGAAAGAGATCGAGGTCGCGCAGGGTTCTCTCGGGACCGTGGGCCACGTCATCGATGAGTTCGGAAACACCGTCGTGAAAGGAACGGCTCAGATCATATCTCAAGGTAAGGACGCCATCCTCGCCGTCAATCTCGATTCCGATTCCGATAGTAACAGCGCCAATAGAAAGAGCCTCGATTCGGTTCGGTACAGTAGGTTCGACGCTCAGGTTCGTGCTATTCAGGGTGATGTTAGCACTTACTCCGAGGAGCCCGAGGATTTGAATGAGTTCAATGAGTGGAAATTAGGGTTTTCGTTGGAGGGGAAGGGTGAGGAAATGGAGGGGCTTTTCAGAGAGAATGATGCTATGGAGAGTGTTTACAAAAAGGTTGTTCCAAATAGTGTTGATAATGAAACTTTCTGGTATAGGTATTATTATAAGGTTTATAAGCTCAAGAAAGCTGAAGATGTTAGGGTTAGGCTTGTAAGTGGAATATCTGGGGAAGATGAGGATTTGAGTTGGGATGTTGAAGACGATGAGAATGACGATGGTGGGATTAGATGTGATGCCAAACCTGTGATTATGAATAAAGAGGTTGGTGGTGAAAATGTGGATAATACCCACTTACATGTTGATGGCAATGAAGAGGGAACAAAGAGATTGGATGTGGAAGAGGAGTCTAAGGAACAAAAGAAAGACAATTTATTGGAAAGTGAGGAAGTTGGCAACAAGGTGGATAAGTCTGTTGAAGAATCACAAGTTGAGAAATCTGAATCTGTTGGTGACAGGGGTGGTGTTGATGAGGCATCGAAGTCAAAAGCGGATGATGGTGTGAGCAAGAATGATTCGACAAGTGAATCCGATGAGAAGGTGGTAAAGGATAGGGAGGTTGGTGATGAGAAAACTTCTGGTAAAGGTAATGAGTCTTTCACGGTTGAAATTCAGCAATCGGCAAATAAGGAGGAGGAGGACCTTGGGTGGGATGACATTGAGGATCTTAGCAGTATTGATGAAAAGAAAACAATGCAGAGTGGTGGCACAAGCAAAGTTGATTTGCGGAAGCGGCTTAGTGCTGCAGAAGAAGACGAAGACTTGAGTTGGGACATTGAAGATGATGATGATGAGCCTGCTAAGGCTTCAAGTGTTTAA

Predicted protein sequences of Glyma02g16880

Limit To All Plant Sequences

>Glyma02g16880.1   sequence type=predicted peptide   gene model=Glyma02g16880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIFKSVFSEDPDPPRPGSNHASPDKAPDPHSPPRSNATESAAGGGGGDGWNFGGLIKTLTSKSESIIETYRRDLQEFGTGLKKEIEVAQGSLGTVGHVIDEFGNTVVKGTAQIISQGKDAILAVNLDSDSDSNSANRKSLDSVRYSRFDAQVRAIQGDVSTYSEEPEDLNEFNEWKLGFSLEGKGEEMEGLFRENDAMESVYKKVVPNSVDNETFWYRYYYKVYKLKKAEDVRVRLVSGISGEDEDLSWDVEDDENDDGGIRCDAKPVIMNKEVGGENVDNTHLHVDGNEEGTKRLDVEEESKEQKKDNLLESEEVGNKVDKSVEESQVEKSESVGDRGGVDEASKSKADDGVSKNDSTSESDEKVVKDREVGDEKTSGKGNESFTVEIQQSANKEEEDLGWDDIEDLSSIDEKKTMQSGGTSKVDLRKRLSAAEEDEDLSWDIEDDDDEPAKASSV*

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