Glyma02g16870 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g16870

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15213238
stop:	15219278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02940	AT	Annotation by Michelle Graham. TAIR10: oxidoreductase, 2OG-Fe(II) oxygenase family protein \| chr4:1306658-1310699 FORWARD LENGTH=569	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG4176	KOG	Uncharacterized conserved protein	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_D7M3B5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M3B5_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336E60	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336E60 related cluster n=1 Tax=unknown RepID=UPI0002336E60	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16870

Paralog	Evidence	Comments
Glyma10g02900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g149900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g16870

Limit To All Plant Sequences

>Glyma02g16870.1   sequence type=CDS   gene model=Glyma02g16870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCTGGCCCTACAACAACATCACCCTCCGATCGACCCACCATGGTCCCTCCCCCAATGCTCGTCTCCGACTCCTTCGCCAAGGACGCCATCCTCGCCTGGTTCCGCGGCGAGTTCGCTGCCGCCAACGCCATCATCGACGCCCTCTGCGCCCACCTCTCCGCCTCCTCCGCCCACGATTACGACGCCGTCTTCACCGCCATCCACCGCCGCAGGCTCAACTGGATCCCCGTCCTCCAGATGCAGAAGTACCACTCCATCGCCGACGTCACGCTCGAGCTCGCCAGACTCGCCGACAGAAACCACAACTCTGCCGCCGCCGAACACGAAACCGACGACAAAACGACGCCGTCGGAGAGTGTCGGAAATGGTGGTGGCGGTGACGAACACGAGGAGTATGAGTCCCCCGAGAGCGAGATTACTGATTCAGGATCTCAAGAAATGCAGGCTAGTCCCATGAACGTTAATATATGTTCCAATCATGAAGAGTGTGAAGGACGTTCTTCACAGTTTAAGTTGACAAAAGGCTTCGCAGCAAAAGAGTCAGTGAAGGGACATATGGTGAATGTAGTAAAAGGATTGAAGTTATATGAGGACATTTTCACTGATTCAGAACTGTGCAAGCTAACAGATTTTGTGAATGAGATCCATGCTGCTGGCCAGAATGGGGAACTGTCAGGTGAAACTTTTATATTATTCAACAAGCAGATGAAAGGGAACAAGAGAGAGCTGATTCAACTGGGTGTTCCAATATTTGGACAGATAAAGGAGGACGCAAAAAGCAATATAGAGCCAATTCCAGTACTTCTCCAAGGTGTCATTGATCACCTTATTCAGTGGCAATTACTTCCCGAGTACAAAAGACCAAATGGTTGTATCATCAACTTCTTTGAAAAGGGGGAGTTTTCTCAGCCATTCCTGAAACCACCGCATCTGGATCAACCTGTGTCCACACTTCTTCTCTCTGAATCAGCTATGGCTTTTGGGCGTATACTTATGAGTGAAAATGATGGGAACTACAAGGGGCCACTCACGCTCTCACTGAAGCAGGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGACATGGCAAGGCACGTAATGTGTCCATCCCCTAACAGAAGGGTCAGCATCACCTTCTTCAGAGTGAGGCCAGACTCCAACCAATGCCAAACACCAACTCCCACTACCATGACAAGTGCAATGACTATGTGGCAACCGGGCATTGCTGCTAGTCCATATGCTTTGCCAAATAGTGCTCTAACTAGCTATGAGGGTATGGACATGAACATGATGCCCAAATGGGGAATGCTTCACGCTCCAATGGTGATGCTTACTCCTATGCGTCCTGTGGCGCTGAACCCTCGCAAACTTGCTGGTGGTGGGACTGGGGTGTTTTTGCCCTGGAATGTGCCATCTAGAAAACCTGCCAAGCATCTTCCCCCACGTGCACAAAAAGGAAGGCTTCTCACATTACCTTCCTCCGTTGAACCACAAATGGGAGAGTCCACTTCTGAACCAAGCATTTGTGTTGAAGGATAA

Predicted protein sequences of Glyma02g16870

Limit To All Plant Sequences

>Glyma02g16870.1   sequence type=predicted peptide   gene model=Glyma02g16870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAGPTTTSPSDRPTMVPPPMLVSDSFAKDAILAWFRGEFAAANAIIDALCAHLSASSAHDYDAVFTAIHRRRLNWIPVLQMQKYHSIADVTLELARLADRNHNSAAAEHETDDKTTPSESVGNGGGGDEHEEYESPESEITDSGSQEMQASPMNVNICSNHEECEGRSSQFKLTKGFAAKESVKGHMVNVVKGLKLYEDIFTDSELCKLTDFVNEIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKEDAKSNIEPIPVLLQGVIDHLIQWQLLPEYKRPNGCIINFFEKGEFSQPFLKPPHLDQPVSTLLLSESAMAFGRILMSENDGNYKGPLTLSLKQGSLLVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQTPTPTTMTSAMTMWQPGIAASPYALPNSALTSYEGMDMNMMPKWGMLHAPMVMLTPMRPVALNPRKLAGGGTGVFLPWNVPSRKPAKHLPPRAQKGRLLTLPSSVEPQMGESTSEPSICVEG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain