Glyma02g16850 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g16850

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15184088
stop:	15189332
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02920	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr4:1292816-1294670 FORWARD LENGTH=418	SoyBase	E_val: 1.00E-83	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_E4MWC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-07-P23 n=1 Tax=Eutrema halophilum RepID=E4MWC7_THEHA	SoyBase	E_val: 5.00E-82	ISS
UniRef100_I1JFC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFC8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16850

Paralog	Evidence	Comments
Glyma10g02930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g149700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16850

Limit To All Plant Sequences

>Glyma02g16850.2   sequence type=transcript   gene model=Glyma02g16850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAAACGATAGAGTAGGAGAGACCGAGGACACACGGGAACAAACCATCCAACAAGTCCTAGTCCGAGGCCAAGAAGACAACCTGGATTTTCTCATCCCACCGTGCCGTTGATCCCTACAGTTTCGGAAGTTAGCGGGTTGAACAAATGGATCACATAAAACCACTTTTTATTTTTATATTTTAAATTTTTTGGTACCACTCAAAGATTCAGATTGCGGAAAATCTTTCGGATTTGAGGACCAGGTAGGGATAAGTCGATGGGCTTGTAACAGAGCCACGAAAGGAGAGGAGTTTTGGTTTCCAAAACCTCGTTTCTTCTCAATACAAAAAAAAAAAATGCTGCAGAAGCTGTGTTTGATGGCTTCTCATGGATGCCCTCCCGGACTTTCTTTGCAGCAAGAGCTGGCCATGGTTGGCTGCACCATTACCAAGGTGGTTAAGGATTCGGTACTAAGTCTTACTTTCTTCATGGGTGTGTATTCGAATCTCCCAGAGGTCACTTTTCCCGCATGGTAGCAATGCTCGCCAGGGAGATCCCTTGGTGCCTAGGGGCTAATTGAATATCTGCAATTGGGTAGGACTGCTTGCGGTTCGGACCTATGCAGTAATCTTTTAGGGTTGTAAACCATTATTGCCTTCTCCTGTATTGAAACTAGAAATTATCAGATATGGGTCCTCCCTAAATCCATTCGAGGAGTCTAGCAAGTCCCAGAAAGAGTGGTTCAATTCTAATCAGATTGTCAACATGAACTTGTCGACTCAAAGGCCTATGCTCATTGATGTCCAAGAAACCTATCCAAGCCCAGTAGATTTTGGCTTTGGCATCGTTGAACAATGCAGTGAGCACGATAAAATTTTGCAGTGTATCATGTCTGAGAGTGCTGAAGCTGGGATAGGTGGAGTACATATATCTTTGTTGTCTGACTTGATGGGTTTACAATTGCCAGGCATTGATGAACCTCAAAAACCATTGACACCTCTTATCCCAAAAAGCAAATTCTTTATCCCGAAGCTTTTGCTCGATATTTTTCAAGATTCAGCCTTTAGTTCAAAGATTACAGTTCATCCAGATGGTCAAGTCACTTTTATGGGCACTGCAATTGAGATGAAAGATCTTCTTTCTGTAGTTGCTGACTCATACTTATTACGTAAGGGTGAAAAACAATCTATGCTTGTTCCGCACTTCAGCAGGATGAGTATCAATGAAGTAGAAGTTACAAGTCTTTCCTCCACATTGGATATTCATTCTACATTGACTGTTCCTTTAAAGAGTCCTGAGAAAGTCAAAGTCAAGCCATCACAAAAGAAGAACAAGAAAGTAGCCAGAGAGAGGGATCTATTCAAGAAGAACTACTTACATGCATGTGAGAGCCTTCTGTCCCTAATGGTTGACAAGAGGCGACAACGGAAAACCGCAATTCTCTCACTGAAGAAATCTGGCCCTGAGCTTCCTGAGCTCCTCACACAATTTTCTGCTGGTATTGCTGGTACTGGCCTTGCTGTCCTGCTATCTGTGATCTGTAAGCTAGCTTGTGGAAGGGGGGTTTCCTTTTGTGCGTATAAGCTCCTCAACACTGGGTTTGGATTTGGTCTGGTTTGGCTTTCTTGGGCAGTTAATAAGCTAAGGGATACAATTGTCAGCATGAACAAGAATACAGGAAAGCTTGGACTGAAAGATGAGGAAATGATTCAAAAGGTCGATAAGAGCCTAAGAGAGGTTTACTTCAGAGCCGCCACGTTGCTAGCAGTGGCAGTGCTAAGGTTAGCTTGAGCACTACCTCTAAGGACATGATCACGTTGAGTTTGAAGAGCTGTAAGCTTCGCAAGGCCACACATTGGAACAACCATTATACCTGATCAGTTGGATGTCCATGGCCATGTCTTTTGGGGATGTGATACAAAGCAATCTTGGTTTCAAACCAAATGAACCTTTGCTTGATGTTGGAAGCACAAGATTGTGGATGATTGGCTTGATCAGCACTTGGATGGTGTACTTACGGTATGGTTAGTACCTCATTTTAATAAACAAAGCAAGCAACATACTCGTATGCTTGGCATTAGGGCGGTAAGACAAATTGTAAAGTGTAATGTAAAATTTTGCGATGAAATACTGTTTTGGTGAAATTGTTGCTTGGTATCAGCGCATGGATTATCTCTGCAAAAGATTAACGCATGCTGTAATGCTAGTGCCACTAATATTCATCACATATAGCAGTAATCTTTGATCTAAGATATGCTACTGAAACATGAAAAACTTTGATTCTTTTTTGTAGCTAAAATCTAGAATTTACGAAAAGTGGCCGAAGTCAGTGGAGTTGAAACTTTGGTAATATTGATTCTG

Coding sequences of Glyma02g16850

Limit To All Plant Sequences

>Glyma02g16850.1   sequence type=CDS   gene model=Glyma02g16850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCAGAAGCTGTGTTTGATGGCTTCTCATGGATGCCCTCCCGGACTTTCTTTGCAGCAAGAGCTGGCCATGGTTGGCTGCACCATTACCAAGGGTTGTAAACCATTATTGCCTTCTCCTGTATTGAAACTAGAAATTATCAGATATGGGTCCTCCCTAAATCCATTCGAGGAGTCTAGCAAGTCCCAGAAAGAGTGGTTCAATTCTAATCAGATTGTCAACATGAACTTGTCGACTCAAAGGCCTATGCTCATTGATGTCCAAGAAACCTATCCAAGCCCAGTAGATTTTGGCTTTGGCATCGTTGAACAATGCAGTGAGCACGATAAAATTTTGCAGTGTATCATGTCTGAGAGTGCTGAAGCTGGGATAGGTGGAGTACATATATCTTTGTTGTCTGACTTGATGGGTTTACAATTGCCAGGCATTGATGAACCTCAAAAACCATTGACACCTCTTATCCCAAAAAGCAAATTCTTTATCCCGAAGCTTTTGCTCGATATTTTTCAAGATTCAGCCTTTAGTTCAAAGATTACAGTTCATCCAGATGGTCAAGTCACTTTTATGGGCACTGCAATTGAGATGAAAGATCTTCTTTCTGTAGTTGCTGACTCATACTTATTACGTAAGGGTGAAAAACAATCTATGCTTGTTCCGCACTTCAGCAGGATGAGTATCAATGAAGTAGAAGTTACAAGTCTTTCCTCCACATTGGATATTCATTCTACATTGACTGTTCCTTTAAAGAGTCCTGAGAAAGTCAAAGTCAAGCCATCACAAAAGAAGAACAAGAAAGTAGCCAGAGAGAGGGATCTATTCAAGAAGAACTACTTACATGCATGTGAGAGCCTTCTGTCCCTAATGGTTGACAAGAGGCGACAACGGAAAACCGCAATTCTCTCACTGAAGAAATCTGGCCCTGAGCTTCCTGAGCTCCTCACACAATTTTCTGCTGGTATTGCTGGTACTGGCCTTGCTGTCCTGCTATCTGTGATCTGTAAGCTAGCTTGTGGAAGGGGGGTTTCCTTTTGTGCGTATAAGCTCCTCAACACTGGGTTTGGATTTGGTCTGGTTTGGCTTTCTTGGGCAGTTAATAAGCTAAGGGATACAATTGTCAGCATGAACAAGAATACAGGAAAGCTTGGACTGAAAGATGAGGAAATGATTCAAAAGGTCGATAAGAGCCTAAGAGAGGTTTACTTCAGAGCCGCCACGTTGCTAGCAGTGGCAGTGCTAAGGTTAGCTTGA

>Glyma02g16850.2   sequence type=CDS   gene model=Glyma02g16850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTGTCGACTCAAAGGCCTATGCTCATTGATGTCCAAGAAACCTATCCAAGCCCAGTAGATTTTGGCTTTGGCATCGTTGAACAATGCAGTGAGCACGATAAAATTTTGCAGTGTATCATGTCTGAGAGTGCTGAAGCTGGGATAGGTGGAGTACATATATCTTTGTTGTCTGACTTGATGGGTTTACAATTGCCAGGCATTGATGAACCTCAAAAACCATTGACACCTCTTATCCCAAAAAGCAAATTCTTTATCCCGAAGCTTTTGCTCGATATTTTTCAAGATTCAGCCTTTAGTTCAAAGATTACAGTTCATCCAGATGGTCAAGTCACTTTTATGGGCACTGCAATTGAGATGAAAGATCTTCTTTCTGTAGTTGCTGACTCATACTTATTACGTAAGGGTGAAAAACAATCTATGCTTGTTCCGCACTTCAGCAGGATGAGTATCAATGAAGTAGAAGTTACAAGTCTTTCCTCCACATTGGATATTCATTCTACATTGACTGTTCCTTTAAAGAGTCCTGAGAAAGTCAAAGTCAAGCCATCACAAAAGAAGAACAAGAAAGTAGCCAGAGAGAGGGATCTATTCAAGAAGAACTACTTACATGCATGTGAGAGCCTTCTGTCCCTAATGGTTGACAAGAGGCGACAACGGAAAACCGCAATTCTCTCACTGAAGAAATCTGGCCCTGAGCTTCCTGAGCTCCTCACACAATTTTCTGCTGGTATTGCTGGTACTGGCCTTGCTGTCCTGCTATCTGTGATCTGTAAGCTAGCTTGTGGAAGGGGGGTTTCCTTTTGTGCGTATAAGCTCCTCAACACTGGGTTTGGATTTGGTCTGGTTTGGCTTTCTTGGGCAGTTAATAAGCTAAGGGATACAATTGTCAGCATGAACAAGAATACAGGAAAGCTTGGACTGAAAGATGAGGAAATGATTCAAAAGGTCGATAAGAGCCTAAGAGAGGTTTACTTCAGAGCCGCCACGTTGCTAGCAGTGGCAGTGCTAAGGTTAGCTTGA

Predicted protein sequences of Glyma02g16850

Limit To All Plant Sequences

>Glyma02g16850.1   sequence type=predicted peptide   gene model=Glyma02g16850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQKLCLMASHGCPPGLSLQQELAMVGCTITKGCKPLLPSPVLKLEIIRYGSSLNPFEESSKSQKEWFNSNQIVNMNLSTQRPMLIDVQETYPSPVDFGFGIVEQCSEHDKILQCIMSESAEAGIGGVHISLLSDLMGLQLPGIDEPQKPLTPLIPKSKFFIPKLLLDIFQDSAFSSKITVHPDGQVTFMGTAIEMKDLLSVVADSYLLRKGEKQSMLVPHFSRMSINEVEVTSLSSTLDIHSTLTVPLKSPEKVKVKPSQKKNKKVARERDLFKKNYLHACESLLSLMVDKRRQRKTAILSLKKSGPELPELLTQFSAGIAGTGLAVLLSVICKLACGRGVSFCAYKLLNTGFGFGLVWLSWAVNKLRDTIVSMNKNTGKLGLKDEEMIQKVDKSLREVYFRAATLLAVAVLRLA*

>Glyma02g16850.2   sequence type=predicted peptide   gene model=Glyma02g16850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLSTQRPMLIDVQETYPSPVDFGFGIVEQCSEHDKILQCIMSESAEAGIGGVHISLLSDLMGLQLPGIDEPQKPLTPLIPKSKFFIPKLLLDIFQDSAFSSKITVHPDGQVTFMGTAIEMKDLLSVVADSYLLRKGEKQSMLVPHFSRMSINEVEVTSLSSTLDIHSTLTVPLKSPEKVKVKPSQKKNKKVARERDLFKKNYLHACESLLSLMVDKRRQRKTAILSLKKSGPELPELLTQFSAGIAGTGLAVLLSVICKLACGRGVSFCAYKLLNTGFGFGLVWLSWAVNKLRDTIVSMNKNTGKLGLKDEEMIQKVDKSLREVYFRAATLLAVAVLRLA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain