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Report for Sequence Feature Glyma02g16783

Feature Type:gene_model
Chromosome:Gm02
Start:15125714
stop:15130288
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g16783
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02880AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1275131-1277913 FORWARD LENGTH=552 SoyBaseE_val: 8.00E-90ISS
GO:0006914GO-bp Annotation by Michelle Graham. GO Biological Process: autophagy SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1L822UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L822_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9ZVT0UniRef Annotation by Michelle Graham. Most informative UniRef hit: F15K9.11 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZVT0_ARATH SoyBaseE_val: 5.00E-82ISS

Expression Patterns of Glyma02g16783
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g16783 not represented in the dataset
Glyma02g16783 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16783
ParalogEvidenceComments
Glyma10g03030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16783 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g148900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g16783
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g16783
>Glyma02g16783.2   sequence type=transcript   gene model=Glyma02g16783   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGCCATGCAACAATATTTTGGACTGAAACACCCTCCGTTTTGATGAAATTCAGATTAAATATCCAATACCTTAGCTTGGTAACTTTCCGTATTTCCAGAGAAATAGGAAATTGCGCATTTTACGTGTGCTCCTTAATTCAATTCCACTCTTACACTGGTCAAGGTGCTTTGCAGACAGCCAATCTTGATCATGGGTTTCAATTCTGTCTATAGAAGCTTGCAGGAGATATTTCCGCAGGTTGATCCCAGGCTACTGAGAGCTGTGGCTATTGAACACCCAAAGGATGCTGATCTAGCGGCTGGAATAGTTATTGCAGAAGTCATCCCATTCATGTCCAAAAAATTACCTGCTGCAATTCCTCCACAGCACAATAACTATGTAGCCTCACTAAATGTTGAAGTTGAAAGTGAGGAGGAAGGCAATAGGTTGAGGCACCGTCAGCTTGTTGATGACGTAACTGTGGGGCCTTCCTCTGCTCCACATTCTATATCTGTAGAAGTTATCAAAACAGCTGATTATTCTTTTGTACCAGATCTGAATGAGGCTCTGGACAAGTCTACAATGTCAAATGATGGTACTGATAAATTTCTTGAAATGAATGATATTAAGGAGCTAGATATTTACCAGAATGCTGAAGATAACTTCAGTGGAGAGACCTTGAATGAGATTGCTCAGGAGATGTCAAATGGCTTTAGTCAGGAAGATAATGAAAATTTTGAGAGACGATTTGTTGATGTTGATTGTGAAAATTTGATATCTTCTGGTATTTGTCAAGAGATGGAACCTAAGCATAATAACCTTAGCAAGGAGGCTGCTTCCAATAATGGTGATGGCAATAGAATTGGAAACGATTCAAATGAAATGGGGTGGTTAGAAGTTGTAAGTTCTTTAGTTGATGATTATGATGCCACTACAAGTCACAGATTGGAAGAATGTGAAACATACTTGATTGAGTTGGAAACTTCAGAGGCTCCAAAAGTTTGTCATGTTCAAGGCGATGCATTAAATTATAAAGATAGTCTTCAATCAGAATTGGTTGCTGGTTCTTCTAGTACTGGTGACAATACTAGTGATGTCGAAGATGATATTGGTGCAAAGAATGCAGGTAGCCAATATAGTCATGTATGCAGGATTGATCTGCTTGAGGAAATCATTGATGAGGCAAAAACTAACAAGAAAATGTTGTTTTCATCAATGGAATCTCTTATCAACTTAATGAGAGAAGTGGAACTTCAGGAGAAAGCTGCAGAGCAGGCTAATATGGAAGCTGCTACTGGAGGGTCTAATATTCTGGCCAGGATAGAAGAGTACAAAACTATGGTGGTGCAAGCTAACGAAGCGAATGACATGCATTCTGGAGAAGTTTATGGGGAAAAAGCAATTCTCACAACTGAACTGAAGGAACTTCAATCACGCTTGCTCGGCTTGTCTGATGAAAGGGACAGGTCTCTTGCAATTCTCGATGAGATCCGCCACATTCTTGAAGTGCGACTAGCTGCAGCAGAAGAACTGAGGAAAGCAGCTGAGCAACTAAAGCTGGAAAAGGAGGAATCTGCACGGAAGGCTCTTGTTGAACAGGAGAGACTGGTGGAGAAGGTAGTACACGAATCACAAAGACTACAGCAGGAGGCAGAGGAGAATTCAAAGTTACAGGAGTTCCTAATTGATCGTGGGCGGGTTGTTGATATGTTGCAAGGAGAAATCTCTGTTATATGTCAGGATATTAAGCTTCTAAAAGAGAAATTTGATGCAAATCTTCCACTGAGTAAATCCTTCACCTCAAGCCAGACTAGTTGCAAGTTAGCTTCATCAGGATCTTCCCACAAAACATTGGCATCTGATGCAGGTTCCGAGCATAGTGAGTCATCTGAAATACGGAAGACAAGCCGGACAGCCTCAATTGAAAGCCTTTCTTCCAAGAGTGGGCACGACGAGGAAGAAAAATCCAAAGCTGATCACAATGCTCTTCTTGATGATGGGTGGTATATTTTGTCGGACTGAATTCCGGAGTTTACTGACTATTTGTTCTGCTGAGAGTGGAAAAACATAGGAGTTAATGCTATATTGTTTATACAACAAAATAAAACCTTAGAATCCTTGGATGATTTTGCTTTATGTTTCAGTAGCATACTAGCATGCATACAATTTTTATATACGTTCTCGAGGTTGGGTTCTCATTGTTTTCCAGATTTTGTATAGAAAACGTCACAGGGAATTACTAGATTACTTCTTTCTCTTCTGTAATGGTGATTGATTTATCTTTATCTTCATTTAATTACTGAGACGGCTGTACAACCGAACGACGTGAATGATCTATTCTGGG
Coding sequences of Glyma02g16783
>Glyma02g16783.1   sequence type=CDS   gene model=Glyma02g16783   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCAGATTAAATATCCAATACCTTAGCTTGGTAACTTTCCGTATTTCCAGAGAAATAGGAAATTGCGCATTTTACGTGTGCTCCTTAATTCAATTCCACTCTTACACTGGTCAAGGTCCTTCTCCTTCTCTACCACCCTCTCTATTTCTCTTTCTCTCTCGATCTTCGCTTCCCAATTTCTTTGCTTCTCATATCATATTTAGCCATATACTAGAAATTAAGCTATCCGATTCTGAGGGTTTCGTTTTTTTTTTCCTTTCTTACGTGCTTTGCAGACAGCCAATCTTGATCATGGGTTTCAATTCTGTCTATAGAAGCTTGCAGGAGATATTTCCGCAGGTTGATCCCAGGCTACTGAGAGCTGTGGCTATTGAACACCCAAAGGATGCTGATCTAGCGGCTGGAATAGTTATTGCAGAAGTCATCCCATTCATGTCCAAAAAATTACCTGCTGCAATTCCTCCACAGCACAATAACTATGTAGCCTCACTAAATGTTGAAGTTGAAAGTGAGGAGGAAGGCAATAGGTTGAGGCACCGTCAGCTTGTTGATGACGTAACTGTGGGGCCTTCCTCTGCTCCACATTCTATATCTGTAGAAGTTATCAAAACAGCTGATTATTCTTTTGTACCAGATCTGAATGAGGCTCTGGACAAGTCTACAATGTCAAATGATGGTACTGATAAATTTCTTGAAATGAATGATATTAAGGAGCTAGATATTTACCAGAATGCTGAAGATAACTTCAGTGGAGAGACCTTGAATGAGATTGCTCAGGAGATGTCAAATGGCTTTAGTCAGGAAGATAATGAAAATTTTGAGAGACGATTTGTTGATGTTGATTGTGAAAATTTGATATCTTCTGGTATTTGTCAAGAGATGGAACCTAAGCATAATAACCTTAGCAAGGAGGCTGCTTCCAATAATGGTGATGGCAATAGAATTGGAAACGATTCAAATGAAATGGGGTGGTTAGAAGTTGTAAGTTCTTTAGTTGATGATTATGATGCCACTACAAGTCACAGATTGGAAGAATGTGAAACATACTTGATTGAGTTGGAAACTTCAGAGGCTCCAAAAGTTTGTCATGTTCAAGGCGATGCATTAAATTATAAAGATAGTCTTCAATCAGAATTGGTTGCTGGTTCTTCTAGTACTGGTGACAATACTAGTGATGTCGAAGATGATATTGGTGCAAAGAATGCAGGTAGCCAATATAGTCATGTATGCAGGATTGATCTGCTTGAGGAAATCATTGATGAGGCAAAAACTAACAAGAAAATGTTGTTTTCATCAATGGAATCTCTTATCAACTTAATGAGAGAAGTGGAACTTCAGGAGAAAGCTGCAGAGCAGGCTAATATGGAAGCTGCTACTGGAGGGTCTAATATTCTGGCCAGGATAGAAGAGTACAAAACTATGGTGGTGCAAGCTAACGAAGCGAATGACATGCATTCTGGAGAAGTTTATGGGGAAAAAGCAATTCTCACAACTGAACTGAAGGAACTTCAATCACGCTTGCTCGGCTTGTCTGATGAAAGGGACAGGTCTCTTGCAATTCTCGATGAGATCCGCCACATTCTTGAAGTGCGACTAGCTGCAGCAGAAGAACTGAGGAAAGCAGCTGAGCAACTAAAGCTGGAAAAGGAGGAATCTGCACGGAAGGCTCTTGTTGAACAGGAGAGACTGGTGGAGAAGGTAGTACACGAATCACAAAGACTACAGCAGGAGGCAGAGGAGAATTCAAAGTTACAGGAGTTCCTAATTGATCGTGGGCGGGTTGTTGATATGTTGCAAGGAGAAATCTCTGTTATATGTCAGGATATTAAGCTTCTAAAAGAGAAATTTGATGCAAATCTTCCACTGAGTAAATCCTTCACCTCAAGCCAGACTAGTTGCAAGTTAGCTTCATCAGGATCTTCCCACAAAACATTGGCATCTGATGCAGGTTCCGAGCATAGTGAGTCATCTGAAATACGGAAGACAAGCCGGACAGCCTCAATTGAAAGCCTTTCTTCCAAGAGTGGGCACGACGAGGAAGAAAAATCCAAAGCTGATCACAATGCTCTTCTTGATGATGGGTGGTATATTTTGTCGGACTGA

>Glyma02g16783.2   sequence type=CDS   gene model=Glyma02g16783   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCAATTCTGTCTATAGAAGCTTGCAGGAGATATTTCCGCAGGTTGATCCCAGGCTACTGAGAGCTGTGGCTATTGAACACCCAAAGGATGCTGATCTAGCGGCTGGAATAGTTATTGCAGAAGTCATCCCATTCATGTCCAAAAAATTACCTGCTGCAATTCCTCCACAGCACAATAACTATGTAGCCTCACTAAATGTTGAAGTTGAAAGTGAGGAGGAAGGCAATAGGTTGAGGCACCGTCAGCTTGTTGATGACGTAACTGTGGGGCCTTCCTCTGCTCCACATTCTATATCTGTAGAAGTTATCAAAACAGCTGATTATTCTTTTGTACCAGATCTGAATGAGGCTCTGGACAAGTCTACAATGTCAAATGATGGTACTGATAAATTTCTTGAAATGAATGATATTAAGGAGCTAGATATTTACCAGAATGCTGAAGATAACTTCAGTGGAGAGACCTTGAATGAGATTGCTCAGGAGATGTCAAATGGCTTTAGTCAGGAAGATAATGAAAATTTTGAGAGACGATTTGTTGATGTTGATTGTGAAAATTTGATATCTTCTGGTATTTGTCAAGAGATGGAACCTAAGCATAATAACCTTAGCAAGGAGGCTGCTTCCAATAATGGTGATGGCAATAGAATTGGAAACGATTCAAATGAAATGGGGTGGTTAGAAGTTGTAAGTTCTTTAGTTGATGATTATGATGCCACTACAAGTCACAGATTGGAAGAATGTGAAACATACTTGATTGAGTTGGAAACTTCAGAGGCTCCAAAAGTTTGTCATGTTCAAGGCGATGCATTAAATTATAAAGATAGTCTTCAATCAGAATTGGTTGCTGGTTCTTCTAGTACTGGTGACAATACTAGTGATGTCGAAGATGATATTGGTGCAAAGAATGCAGGTAGCCAATATAGTCATGTATGCAGGATTGATCTGCTTGAGGAAATCATTGATGAGGCAAAAACTAACAAGAAAATGTTGTTTTCATCAATGGAATCTCTTATCAACTTAATGAGAGAAGTGGAACTTCAGGAGAAAGCTGCAGAGCAGGCTAATATGGAAGCTGCTACTGGAGGGTCTAATATTCTGGCCAGGATAGAAGAGTACAAAACTATGGTGGTGCAAGCTAACGAAGCGAATGACATGCATTCTGGAGAAGTTTATGGGGAAAAAGCAATTCTCACAACTGAACTGAAGGAACTTCAATCACGCTTGCTCGGCTTGTCTGATGAAAGGGACAGGTCTCTTGCAATTCTCGATGAGATCCGCCACATTCTTGAAGTGCGACTAGCTGCAGCAGAAGAACTGAGGAAAGCAGCTGAGCAACTAAAGCTGGAAAAGGAGGAATCTGCACGGAAGGCTCTTGTTGAACAGGAGAGACTGGTGGAGAAGGTAGTACACGAATCACAAAGACTACAGCAGGAGGCAGAGGAGAATTCAAAGTTACAGGAGTTCCTAATTGATCGTGGGCGGGTTGTTGATATGTTGCAAGGAGAAATCTCTGTTATATGTCAGGATATTAAGCTTCTAAAAGAGAAATTTGATGCAAATCTTCCACTGAGTAAATCCTTCACCTCAAGCCAGACTAGTTGCAAGTTAGCTTCATCAGGATCTTCCCACAAAACATTGGCATCTGATGCAGGTTCCGAGCATAGTGAGTCATCTGAAATACGGAAGACAAGCCGGACAGCCTCAATTGAAAGCCTTTCTTCCAAGAGTGGGCACGACGAGGAAGAAAAATCCAAAGCTGATCACAATGCTCTTCTTGATGATGGGTGGTATATTTTGTCGGACTGA
Predicted protein sequences of Glyma02g16783
>Glyma02g16783.1   sequence type=predicted peptide   gene model=Glyma02g16783   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFRLNIQYLSLVTFRISREIGNCAFYVCSLIQFHSYTGQGPSPSLPPSLFLFLSRSSLPNFFASHIIFSHILEIKLSDSEGFVFFFLSYVLCRQPILIMGFNSVYRSLQEIFPQVDPRLLRAVAIEHPKDADLAAGIVIAEVIPFMSKKLPAAIPPQHNNYVASLNVEVESEEEGNRLRHRQLVDDVTVGPSSAPHSISVEVIKTADYSFVPDLNEALDKSTMSNDGTDKFLEMNDIKELDIYQNAEDNFSGETLNEIAQEMSNGFSQEDNENFERRFVDVDCENLISSGICQEMEPKHNNLSKEAASNNGDGNRIGNDSNEMGWLEVVSSLVDDYDATTSHRLEECETYLIELETSEAPKVCHVQGDALNYKDSLQSELVAGSSSTGDNTSDVEDDIGAKNAGSQYSHVCRIDLLEEIIDEAKTNKKMLFSSMESLINLMREVELQEKAAEQANMEAATGGSNILARIEEYKTMVVQANEANDMHSGEVYGEKAILTTELKELQSRLLGLSDERDRSLAILDEIRHILEVRLAAAEELRKAAEQLKLEKEESARKALVEQERLVEKVVHESQRLQQEAEENSKLQEFLIDRGRVVDMLQGEISVICQDIKLLKEKFDANLPLSKSFTSSQTSCKLASSGSSHKTLASDAGSEHSESSEIRKTSRTASIESLSSKSGHDEEEKSKADHNALLDDGWYILSD*

>Glyma02g16783.2   sequence type=predicted peptide   gene model=Glyma02g16783   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFNSVYRSLQEIFPQVDPRLLRAVAIEHPKDADLAAGIVIAEVIPFMSKKLPAAIPPQHNNYVASLNVEVESEEEGNRLRHRQLVDDVTVGPSSAPHSISVEVIKTADYSFVPDLNEALDKSTMSNDGTDKFLEMNDIKELDIYQNAEDNFSGETLNEIAQEMSNGFSQEDNENFERRFVDVDCENLISSGICQEMEPKHNNLSKEAASNNGDGNRIGNDSNEMGWLEVVSSLVDDYDATTSHRLEECETYLIELETSEAPKVCHVQGDALNYKDSLQSELVAGSSSTGDNTSDVEDDIGAKNAGSQYSHVCRIDLLEEIIDEAKTNKKMLFSSMESLINLMREVELQEKAAEQANMEAATGGSNILARIEEYKTMVVQANEANDMHSGEVYGEKAILTTELKELQSRLLGLSDERDRSLAILDEIRHILEVRLAAAEELRKAAEQLKLEKEESARKALVEQERLVEKVVHESQRLQQEAEENSKLQEFLIDRGRVVDMLQGEISVICQDIKLLKEKFDANLPLSKSFTSSQTSCKLASSGSSHKTLASDAGSEHSESSEIRKTSRTASIESLSSKSGHDEEEKSKADHNALLDDGWYILSD*






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