Glyma02g16700 - SoyBase

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Report for Sequence Feature Glyma02g16700

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15073585
stop:	15077472
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27310	AT	Annotation by Michelle Graham. TAIR10: F-box family protein \| chr2:11683954-11684967 REVERSE LENGTH=337	SoyBase	E_val: 5.00E-36	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7IEE1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box protein n=1 Tax=Medicago truncatula RepID=G7IEE1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JFB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFB5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g16700 not represented in the dataset	Glyma02g16700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16700

Paralog	Evidence	Comments
Glyma10g03100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g148100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16700

Limit To All Plant Sequences

>Glyma02g16700.2   sequence type=transcript   gene model=Glyma02g16700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAAAAGTGGTTTTCGGTCGTGGCAGAATCTGTTTGGTGAATGGAGGGGGCAGTGCATGGCGTCCACCTCAAAAGTTGTAGGAAATCGCCGACCTCGAAACCCGCCTCAAGTCAAGTTCGTGTCTTTTCAAGGTTGAGAACAACCAAGAACCAGAGCGACACAAGCACATGACTGTCTCTCTTCCTAAACCGAATGAACTGCGACCTTTAAACCAATCTTCTTACATAATGGTCGTTTGAAAATCTCGTATTTTCATCTGGGTTTCCTTCAAAATCATTTTTTTTTGTTTCCCTTTCTTCACTTCCTCTGCCCTTCTTGTCTTGGTTCTTCTGTTTTAAGCAGCTTTCTCTTGTTGATCATTAATCATGTCAATATTTAAGGCTTTGAAGCAGTATCTGTCACTAGTCTACATTCAATCTGATTTGCTGTACTGGAGTGTCTAGAAGAGACGTTATTTGGTATATTGACAAAAGCAATATCTACAGTTCCACCTATGTTACAGGGATTATTGTTATGGCAGTTGCACCTGTTGAGAGTATAACCTCGCTGAGTAGTGATCTCTTCTATGACATATTACGACGTCTTGATGGCCCAACGCTGGCTAGTGCAGCTTGCACTTGTGCATCATTTTCTTCCATCTCTAAAGAAGAGAGTTTATGGGAAAATGTGTGTTCTTCTGTGTGGCCTTCAACCAATAGGGAAGATGTCAAAAGTTTAATATCTTCTATCGGTGGATACAGAAAATTCTATGCAGATTGTTTTCCTCTTATTGTAAACAAGGAGGTAGGAGAGTATCAATGGAACAACAATCTTCAGTACCCTGATGATTGGACTGAGGCCGAATATTATGGGGACATGATTGAATTTGAAAGCATCTCTCCATCAGATTTTGTTTCCATTGTGGATATCAGGTTTAAGGAGAAACCAATCTGCTCCAAAGTTCTATGGGGAATTCCGAATGCAAATGGCTATGATGAGTGGTTCTTTAACTGTCCTTTCCGGATTGATCTTCTCAGTTGTGCAGATAGAGATGATAATAATGATGGTGTGGTTACCCTTTCAGTATCTGATGGATTGCCACCAATTACATCCATGGAAAGGGAAAAGAAAGATGGGAAACTATGGCAGGAGCTTCGTGATGGTCTCTTGCTTAGTTGGATCATAGTAAACAAGAAAATAAAGCAATCTGCTAATCTTGCAAGCTGGAGCCCTTTAGATGGACAAAGGCATTGGCCTACAGACAAGGATTTTGTCTTTCGTTTTGGATCTGTTCTCTCTGCCAAGGGCATTCTTCCTTCTGAAGCAGTGCAGTGCATCCTCATTATGAAGTTTAGAGTGGTTCACATTGAAGAAGAGGGTGTTCAAACAAATCTTAAGGCAACAGAGCTGAGTATGCAGTTGGAAGACATGGAATGTGCTCATGTTAATGGGAGGAACAGTTTGCTTATTCTTAAGGAAGCACTTAGCTGCCGAAGGAGCAACAATTTTAGTGAAGTACTTGAATCCTGTCTTATGTACTCAAAAGTGCAAAATAAGTTGAAAGAGGAGAAGATTAAAAACGAAAGTAGGTTGGACACACTTTGCATTTTAAGTGGCATTGTTGCTGTAATGACATTTTGGTACTATGTTTTGTGATATGGTATGGCATTGTTCGTTTTACTGGAATAAGCTAATGTTGATCTAGCAGATGATCAAATTTGGCACTAACATAAGATTCCGAATAAAGTAACTAATTGATGAAAGCTTCATTTGGTTTGAGATTTGAAATTCTATCAATATGAAACTTTTGCAAATTGGCTTGCATCAGCAGGAGCTGATATT

Coding sequences of Glyma02g16700

Limit To All Plant Sequences

>Glyma02g16700.1   sequence type=CDS   gene model=Glyma02g16700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTTGCACCTGTTGAGAGTATAACCTCGCTGAGTAGTGATCTCTTCTATGACATATTACGACGTCTTGATGGCCCAACGCTGGCTAGTGCAGCTTGCACTTGTGCATCATTTTCTTCCATCTCTAAAGAAGAGAGTTTATGGGAAAATGTGTGTTCTTCTGTGTGGCCTTCAACCAATAGGGAAGATGTCAAAAGTTTAATATCTTCTATCGGTGGATACAGAAAATTCTATGCAGATTGTTTTCCTCTTATTGTAAACAAGGAGGTAGGAGAGTATCAATGGAACAACAATCTTCAGTACCCTGATGATTGGACTGAGGCCGAATATTATGGGGACATGATTGAATTTGAAAGCATCTCTCCATCAGATTTTGTTTCCATTGTGGATATCAGGTTTAAGGAGAAACCAATCTGCTCCAAAGTTCTATGGGGAATTCCGAATGCAAATGGCTATGATGAGTGGTTCTTTAACTGTCCTTTCCGGATTGATCTTCTCAGTTGTGCAGATAGAGATGATAATAATGATGGTGTGGTTACCCTTTCAGTATCTGATGGATTGCCACCAATTACATCCATGGAAAGGGAAAAGAAAGATGGGAAACTATGGCAGGAGCTTCGTGATGGTCTCTTGCTTAGTTGGATCATAGTAAACAAGAAAATAAAGCAATCTGCTAATCTTGCAAGCTGGAGCCCTTTAGATGGACAAAGGCATTGGCCTACAGACAAGGATTTTGTCTTTCGTTTTGGATCTGTTCTCTCTGCCAAGGGCATTCTTCCTTCTGAAGCAGTGCAGTGCATCCTCATTATGAAGTTTAGAGTGGTTCACATTGAAGAAGAGGGTGTTCAAACAAATCTTAAGGCAACAGAGCTGAGTATGCAGTTGGAAGACATGGAATGTGCTCATGTTAATGGGAGGAACAGTTTGCTTATTCTTAAGGAAGCACTTAGCTGCCGAAGGAGCAACAATTTTAGTGAAGTACTTGAATCCTGTCTTATGTACTCAAAAGTGCAAAATAAGTTGAAAGAGGAGAAGATTAAAAACGAAAGTAGGTTGGACACACTTTGCATTTTAAGTGGCATTGTTGCTGTAATGACATTTTGGTACTATGTTTTGTGA

>Glyma02g16700.2   sequence type=CDS   gene model=Glyma02g16700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTTGCACCTGTTGAGAGTATAACCTCGCTGAGTAGTGATCTCTTCTATGACATATTACGACGTCTTGATGGCCCAACGCTGGCTAGTGCAGCTTGCACTTGTGCATCATTTTCTTCCATCTCTAAAGAAGAGAGTTTATGGGAAAATGTGTGTTCTTCTGTGTGGCCTTCAACCAATAGGGAAGATGTCAAAAGTTTAATATCTTCTATCGGTGGATACAGAAAATTCTATGCAGATTGTTTTCCTCTTATTGTAAACAAGGAGGTAGGAGAGTATCAATGGAACAACAATCTTCAGTACCCTGATGATTGGACTGAGGCCGAATATTATGGGGACATGATTGAATTTGAAAGCATCTCTCCATCAGATTTTGTTTCCATTGTGGATATCAGGTTTAAGGAGAAACCAATCTGCTCCAAAGTTCTATGGGGAATTCCGAATGCAAATGGCTATGATGAGTGGTTCTTTAACTGTCCTTTCCGGATTGATCTTCTCAGTTGTGCAGATAGAGATGATAATAATGATGGTGTGGTTACCCTTTCAGTATCTGATGGATTGCCACCAATTACATCCATGGAAAGGGAAAAGAAAGATGGGAAACTATGGCAGGAGCTTCGTGATGGTCTCTTGCTTAGTTGGATCATAGTAAACAAGAAAATAAAGCAATCTGCTAATCTTGCAAGCTGGAGCCCTTTAGATGGACAAAGGCATTGGCCTACAGACAAGGATTTTGTCTTTCGTTTTGGATCTGTTCTCTCTGCCAAGGGCATTCTTCCTTCTGAAGCAGTGCAGTGCATCCTCATTATGAAGTTTAGAGTGGTTCACATTGAAGAAGAGGGTGTTCAAACAAATCTTAAGGCAACAGAGCTGAGTATGCAGTTGGAAGACATGGAATGTGCTCATGTTAATGGGAGGAACAGTTTGCTTATTCTTAAGGAAGCACTTAGCTGCCGAAGGAGCAACAATTTTAGTGAAGTACTTGAATCCTGTCTTATGTACTCAAAAGTGCAAAATAAGTTGAAAGAGGAGAAGATTAAAAACGAAAGTAGGTTGGACACACTTTGCATTTTAAGTGGCATTGTTGCTGTAATGACATTTTGGTACTATGTTTTGTGA

Predicted protein sequences of Glyma02g16700

Limit To All Plant Sequences

>Glyma02g16700.1   sequence type=predicted peptide   gene model=Glyma02g16700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVAPVESITSLSSDLFYDILRRLDGPTLASAACTCASFSSISKEESLWENVCSSVWPSTNREDVKSLISSIGGYRKFYADCFPLIVNKEVGEYQWNNNLQYPDDWTEAEYYGDMIEFESISPSDFVSIVDIRFKEKPICSKVLWGIPNANGYDEWFFNCPFRIDLLSCADRDDNNDGVVTLSVSDGLPPITSMEREKKDGKLWQELRDGLLLSWIIVNKKIKQSANLASWSPLDGQRHWPTDKDFVFRFGSVLSAKGILPSEAVQCILIMKFRVVHIEEEGVQTNLKATELSMQLEDMECAHVNGRNSLLILKEALSCRRSNNFSEVLESCLMYSKVQNKLKEEKIKNESRLDTLCILSGIVAVMTFWYYVL*

>Glyma02g16700.2   sequence type=predicted peptide   gene model=Glyma02g16700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVAPVESITSLSSDLFYDILRRLDGPTLASAACTCASFSSISKEESLWENVCSSVWPSTNREDVKSLISSIGGYRKFYADCFPLIVNKEVGEYQWNNNLQYPDDWTEAEYYGDMIEFESISPSDFVSIVDIRFKEKPICSKVLWGIPNANGYDEWFFNCPFRIDLLSCADRDDNNDGVVTLSVSDGLPPITSMEREKKDGKLWQELRDGLLLSWIIVNKKIKQSANLASWSPLDGQRHWPTDKDFVFRFGSVLSAKGILPSEAVQCILIMKFRVVHIEEEGVQTNLKATELSMQLEDMECAHVNGRNSLLILKEALSCRRSNNFSEVLESCLMYSKVQNKLKEEKIKNESRLDTLCILSGIVAVMTFWYYVL*

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