Glyma02g16680 - SoyBase

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Report for Sequence Feature Glyma02g16680

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15066155
stop:	15071213
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46600	AT	Annotation by Michelle Graham. TAIR10: Aluminium activated malate transporter family protein \| chr5:18907849-18910742 REVERSE LENGTH=539	SoyBase	E_val: 4.00E-87	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF11744	PFAM	Aluminium activated malate transporter	JGI		ISS
UniRef100_I1JFB2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFB2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LS23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter 13 n=1 Tax=Arabidopsis thaliana RepID=ALMTD_ARATH	SoyBase	E_val: 2.00E-84	ISS

Expression Patterns of Glyma02g16680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16680

Paralog	Evidence	Comments
Glyma10g03130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g147900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16680

Limit To All Plant Sequences

>Glyma02g16680.2   sequence type=transcript   gene model=Glyma02g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACTAGCTATAGCTGAAGAATCAAATTCCAACACAAAAACGAGAACACAAGACATAAGGGAGTTGTACTAAAGACGACAACAATGGAATCAACTCATGTAATATCCATTACAAATGGAGAAGAGAATGTTGCTCCAACGAAGAATGCTAAAACATTCCAATTTTCACTTTCACTTCCACCCGTTTTTTCCCGTCTTAGAGAAAACAAATTAATCCAGTTCTCTCTTTTCCCCATCACTTCCTATCTGAGGCAAAAGAAAGACACTAAAAAAATTATCCACAGCATCAAAGTTGGAATCTCCCTTGTATTGATTTCACTCCTGTACTTCGTGGATCCTCTCTATGAGCAAGTTGGAGATAATGCTATATGGGCTATCATGACTGTTGTTGTCACTTTTGAATTTTCTGCGGGAGCTACGCTAGGAAAAGGTTTAAATCGCGGAATGGGAACCATATTAGGAGGTGGACTGGGTTGCATAGCCGCAGTTTTGGCTCAAAACGTTGGCGGAGGAATTGGCAACTCGATTATAATTGGTACTTCTGTATTTATCTTTGGAACAATTGCGACATATTGTCGCCTATTCCCTAGTGTGAAGAAGAGATACGATTACGGAGTGATGATCTTTATCCTCACTTTTAATTTGGTTGTGGTGTCTGGTGTGCGCATTCAAGATCAGAAAGTTTGGAAAATAGCAAGTGAACGTCTTTTAACAATTGTCATGGGTTTCGTTGTGTGCATTTGTGTGAGCTTCTTGGTCTTCCCCTTGTGGGCCAGCGATGAACTTCATGATTCCACTGTCTCTAGATTCCAACACCTTGCCAATGCATTACAAGGCTGCTTGGAGGAATATGTCAAATTTGCTACTGAAAAAGAAAATAAGAAGGCTGGTGCTAGCTTCACTGTTTGCAAGTCGCTGTTGGACTCCAAATCAAAGGATGAGATGCTGGCAAATTTCGCAAAATGGGAACCATGGCATGGAAAATTTGGATTTTTCTATCCATGGGAGAAGTACCTAAAGATTGGAGAGGTTCTTCGAGAACTTGCTGCAATTATTCTTGCTCTGGGAGGTTGCCTCCAAGCCTCAACTACGGTAGTTAAATAATACATTTAAGAATGCAGTCTTTTTATTTTTATTTTTATCGGAAACTGGATATATCAGCAATCCTCAGTGTGAATTACTTTTGTTCACACATTCCATGCAAAATGACAAAAGATAATAGGCTTTTCTTTTGGTCCATAAATATATAGTATTAGGAAATTGCTTTGCGCACGAGTCAAATTACTGGTACATCCAACATATGATAGACAATTTCAATATT

Coding sequences of Glyma02g16680

Limit To All Plant Sequences

>Glyma02g16680.1   sequence type=CDS   gene model=Glyma02g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCAACTCATGTAATATCCATTACAAATGGAGAAGAGAATGTTGCTCCAACGAAGAATGCTAAAACATTCCAATTTTCACTTTCACTTCCACCCGTTTTTTCCCGTCTTAGAGAAAACAAATTAATCCAGTTCTCTCTTTTCCCCATCACTTCCTATCTGAGGCAAAAGAAAGACACTAAAAAAATTATCCACAGCATCAAAGTTGGAATCTCCCTTGTATTGATTTCACTCCTGTACTTCGTGGATCCTCTCTATGAGCAAGTTGGAGATAATGCTATATGGGCTATCATGACTGTTGTTGTCACTTTTGAATTTTCTGCGGGAGCTACGCTAGGAAAAGGTTTAAATCGCGGAATGGGAACCATATTAGGAGGTGGACTGGGTTGCATAGCCGCAGTTTTGGCTCAAAACGTTGGCGGAGGAATTGGCAACTCGATTATAATTGGTACTTCTGTATTTATCTTTGGAACAATTGCGACATATTGTCGCCTATTCCCTAGTGTGAAGAAGAGATACGATTACGGAGTGATGATCTTTATCCTCACTTTTAATTTGGTTGTGGTGTCTGGTGTGCGCATTCAAGATCAGAAAGTTTGGAAAATAGCAAGTGAACGTCTTTTAACAATTGTCATGGGTTTCGTTGTGTGCATTTGTGTGAGCTTCTTGGTCTTCCCCTTGTGGGCCAGCGATGAACTTCATGATTCCACTGTCTCTAGATTCCAACACCTTGCCAATGCATTACAAGGCTGCTTGGAGGAATATGTCAAATTTGCTACTGAAAAAGAAAATAAGAAGGCTGGTGCTAGCTTCACTGTTTGCAAGTCGCTGTTGGACTCCAAATCAAAGGATGAGATGCTGGCAAATTTCGCAAAATGGGAACCATGGCATGGAAAATTTGGATTTTTCTATCCATGGGAGAAGTACCTAAAGATTGGAGAGGTTCTTCGAGAACTTGCTGCAATTATTCTTGCTCTGGGAGGTTGCCTCCAAGCCTCAACTACGCCCATGGAATTGGCATCGGTTTGTCAAACAGTCCAATTGGAATCATGTGAAGCAATTGGGTCACGGATTGTGTGGACTCTGCAAGAACTTGGAGACAGCATGAATCAAATGAGGAAAGGTGAGGCAGAGCCTCAAATATCAGCAAAGTTGAAGGCAGCGAGAGCAGAGTTAAGCTTGGTGATTGCCACGTCCAAGATAGCAGCAATTGAGAATATTGATGCACTGGCAGTAGCAAGCTTCGTGTTCTTGCTCAAGAAAGTGGTGGATAAAGTAGAAGAACTGGCCAAAGAAGTGGAGCAAGTTGGAGACATTGCCGGTTTTCGTGCTCATTCAAGTACTATTGTCTCTTCTTAG

>Glyma02g16680.2   sequence type=CDS   gene model=Glyma02g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCAACTCATGTAATATCCATTACAAATGGAGAAGAGAATGTTGCTCCAACGAAGAATGCTAAAACATTCCAATTTTCACTTTCACTTCCACCCGTTTTTTCCCGTCTTAGAGAAAACAAATTAATCCAGTTCTCTCTTTTCCCCATCACTTCCTATCTGAGGCAAAAGAAAGACACTAAAAAAATTATCCACAGCATCAAAGTTGGAATCTCCCTTGTATTGATTTCACTCCTGTACTTCGTGGATCCTCTCTATGAGCAAGTTGGAGATAATGCTATATGGGCTATCATGACTGTTGTTGTCACTTTTGAATTTTCTGCGGGAGCTACGCTAGGAAAAGGTTTAAATCGCGGAATGGGAACCATATTAGGAGGTGGACTGGGTTGCATAGCCGCAGTTTTGGCTCAAAACGTTGGCGGAGGAATTGGCAACTCGATTATAATTGGTACTTCTGTATTTATCTTTGGAACAATTGCGACATATTGTCGCCTATTCCCTAGTGTGAAGAAGAGATACGATTACGGAGTGATGATCTTTATCCTCACTTTTAATTTGGTTGTGGTGTCTGGTGTGCGCATTCAAGATCAGAAAGTTTGGAAAATAGCAAGTGAACGTCTTTTAACAATTGTCATGGGTTTCGTTGTGTGCATTTGTGTGAGCTTCTTGGTCTTCCCCTTGTGGGCCAGCGATGAACTTCATGATTCCACTGTCTCTAGATTCCAACACCTTGCCAATGCATTACAAGGCTGCTTGGAGGAATATGTCAAATTTGCTACTGAAAAAGAAAATAAGAAGGCTGGTGCTAGCTTCACTGTTTGCAAGTCGCTGTTGGACTCCAAATCAAAGGATGAGATGCTGGCAAATTTCGCAAAATGGGAACCATGGCATGGAAAATTTGGATTTTTCTATCCATGGGAGAAGTACCTAAAGATTGGAGAGGTTCTTCGAGAACTTGCTGCAATTATTCTTGCTCTGGGAGGTTGCCTCCAAGCCTCAACTACGGTAGTTAAATAA

Predicted protein sequences of Glyma02g16680

Limit To All Plant Sequences

>Glyma02g16680.1   sequence type=predicted peptide   gene model=Glyma02g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESTHVISITNGEENVAPTKNAKTFQFSLSLPPVFSRLRENKLIQFSLFPITSYLRQKKDTKKIIHSIKVGISLVLISLLYFVDPLYEQVGDNAIWAIMTVVVTFEFSAGATLGKGLNRGMGTILGGGLGCIAAVLAQNVGGGIGNSIIIGTSVFIFGTIATYCRLFPSVKKRYDYGVMIFILTFNLVVVSGVRIQDQKVWKIASERLLTIVMGFVVCICVSFLVFPLWASDELHDSTVSRFQHLANALQGCLEEYVKFATEKENKKAGASFTVCKSLLDSKSKDEMLANFAKWEPWHGKFGFFYPWEKYLKIGEVLRELAAIILALGGCLQASTTPMELASVCQTVQLESCEAIGSRIVWTLQELGDSMNQMRKGEAEPQISAKLKAARAELSLVIATSKIAAIENIDALAVASFVFLLKKVVDKVEELAKEVEQVGDIAGFRAHSSTIVSS*

>Glyma02g16680.2   sequence type=predicted peptide   gene model=Glyma02g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESTHVISITNGEENVAPTKNAKTFQFSLSLPPVFSRLRENKLIQFSLFPITSYLRQKKDTKKIIHSIKVGISLVLISLLYFVDPLYEQVGDNAIWAIMTVVVTFEFSAGATLGKGLNRGMGTILGGGLGCIAAVLAQNVGGGIGNSIIIGTSVFIFGTIATYCRLFPSVKKRYDYGVMIFILTFNLVVVSGVRIQDQKVWKIASERLLTIVMGFVVCICVSFLVFPLWASDELHDSTVSRFQHLANALQGCLEEYVKFATEKENKKAGASFTVCKSLLDSKSKDEMLANFAKWEPWHGKFGFFYPWEKYLKIGEVLRELAAIILALGGCLQASTTVVK*

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