SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03160 | AT | Annotation by Michelle Graham. TAIR10: FZO-like | chr1:761321-766053 FORWARD LENGTH=912 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0009228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thiamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0031969 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast membrane | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0004789 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thiamine-phosphate diphosphorylase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0448 | KOG | Mitofusin 1 GTPase, involved in mitochondrila biogenesis | JGI | ISS | |
| PTHR11649 | Panther | MSS1/TRME-RELATED GTP-BINDING PROTEIN | JGI | ISS | |
| PTHR11649:SF44 | Panther | JGI | ISS | ||
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| UniRef100_G7IED3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein engA n=1 Tax=Medicago truncatula RepID=G7IED3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JFA7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFA7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g16630 not represented in the dataset |
Glyma02g16630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g03190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g147400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g16630.1 sequence type=CDS gene model=Glyma02g16630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTACCTTGTTCCGTCACATCCCCTTCGTCACCGTTCACTGCAATCATCCCACGCCACACCTTCTTCTCTCGCTCTTCCTCTCTTCCCCTTCGCCGCGCACGTGCTTTTCCCATAAACTCGCTCTCCAATGGCTCCTCCTCCCAGTTCAACCAGCAACTCTTCCGGCCCCGCGACCCGCCGCAGCCCCGAACCCTCTTCCCCGGCGGCTACAAGAGGCCCGAGCTCAAGGTCCCCACTCTCGTCCTCCAACTCGATCCCGCCGAGGTTCTCAGCGCCGACACCGACGCCTTGGCTTTGATCGACAGGGCCGTCTCCAAATGGGTCGGAATCGTCGTCCTCGCTAGCAACGAAGCCAGCGGCGGCAAGCTCTACGAGGCTGCATGCTCGTTGAAGTCCCTGATTCAAGACCGCGCCTATTTGCTTGTCGCTGAGCGCGTTGATATCGCCGCCGCCACCGCCGCTAGCGGAGTTTTGCTCTCTGACCAAGGCCTTCCCACCGTTGTTGCTAGAAATACGATGTTGGATTCAAAGTCTGAATTGGTGGTTCTTCCCTTGGTTGCTAGGATTGTTCAAACCGTGGATGCTGCGGTGAATGCGTCTAAATCAGAAGGTGCTGATTTTCTTATATATGGTGGTGGTGACCTGAATCGTGTTGGTCAGGAAGTTGGTTCTCTGTATGAGAGTGTGAAGATTCCTATTTTTGTCTCGTGTGTGAAAAACAACATGTCTTATGCTGATGCGTCGGGTTTGCTTGCCTCTGGTGCTAGTGGTTTTGTTACTAGTTTGGCGAATTTTGGTTTGTTTGGCGATGAGTTCTTGCACAAACTATTTGGCACTGTGTATGCAAGTGATGATGGTGGGAGGATGAGTGAGAATAAACTGAATGTAGATAATGGTTTTCAGAGTGAGACAGAGGTTGTGGCTGGGTTTGTTAAGCTGGAGGATAGGGAAAAACTATTAATTGAAACAGAGAGATTGGTGTTGAATGAAGCTATTGAAGTTATCAAGAGGGCTGCACCTCTGATGGAGGAGGTTTCACTTCTTAATGATGCGGTTTCTCAAATTGATGAGCCATTCTTACTGGTTATAGTGGGGGAATTCAACTCTGGTAAATCTACTGTGATTAATGCGCTTCTTGGAGAAAGATATCTCAAAGAGGGAGTTGTTCCAACAACTAATGAGATCACATTTTTACGATATACTGACTTAGATATTGAACAACAACAGTGTGAAAGGCATCCAGATGGTCAATATATTTGCTACATTCCTGCTCCAATTCTTAAGGAGATGACCATTGTTGATACACCTGGAACTAATGTGATTCTTCAGAGGCAGCAGCGTCTTACAGAGGAATTTGTACCCCGTGCAGATTTACTTCTTTTTGTCATTTCTGCTGATCGTCCTTTAACTGGAAGTGAGATTGCTTTTCTTCGTTATTCTCAGCAGTGGAAAAAGAAAGCGGTTTTTGTCTTGAATAAAGCTGACATATATCAGAATAATCATGAGCTTGAGGAAGCAATGTCCTTCATTAAGGACAATATACAGAGATTGCTGAATACTGAAGATGTCATATTATATCCTGTATCTGCTCGGTCTGCTCTTGAAGCAAAACTTATGGCTACCACCAATGTTGGGAGGCTAAATGAAGAATTATCAACCTCTGATTCTCATTATGGTGCCATCAGTTTCTTTGAACTTGAAAACTTCTTGTATAGCTTTCTAGATGGGTCAACAATCCCAGGAATGGACAGAATGAGGCTCAAACTTGAAACACCTGTTGCAATTGCAGATAGACTAATTTCTGCATGTGAAACTCTTGTGACACAAGACTACCGATATGCCAAGCAGGATTTGGCTGCAGTAGAAGACATTGTTAATAATGTAAATGATTTTGCTTTGAATATGGTAACTGAGAGCCTTTCTTGGAGGAGACAAACTCTGTCTTTGATTGAAACTACAAAATCACGTGTCATAGAGCTTGTTGAAGCTAATCTGCAATTGTCAAATTTTGATATTATTGCTTCATATGCTTTCAAAGGAGAAAAAAATGTAATGCCTACTACCTCAAGGATTCAGAATGACATAATTGGTCCTGCTGTCTCCGCTGTCCAGAAAATTCTAGAAGAATACGGAAATTGGTTATATTCCAAATATACCCAACAAGGGAGACTATACAAGGAATCCTTTGAAAAACGATGGCCCTCCTTGAGCCATGAAAGTAGTCAGATAAATTTTGAGACGGACCAGTTGCTAAAGAAAGTGGATCAAGCTGGCAGCCAGGTGATTGACAATTTCAGCAGCAATGCAGTTTCTAAGTCATTTGAGCAAGAAGTACGGGAAATGATTTTGGGGACTTTTGGTCAACTAGGTGTGGCTGGTTTATCTGCTTCGCTACTGACATCTGTGCTGCAAACCACCTTGGACGATCTTCTTGCTCTTGGCATTTGTTCTGCTGGCGGGTATCTAGCTATATCAACTTTTCCAGCTCGTAGGCAGAAGGTGATAGATAAGGTGAAAAGAAAAGCAGATACCTTGGCATATGAACTTGAAGAGGCCATGAAGAAGGATTTGACTGAAGCCATAGAAAATTTGGATACCTTTGTGAAAGTCCTTAGCAAACCTTACCAAGATGAAGCGCAGAATAGACTTAACAGGCTAGTAGAGATTCAAGAAGAATTGTCAAATGTTGAGAAAAAACTTAGAACGCTACAAATTGACATTCAAAATCTTAACGTGTCATGA
>Glyma02g16630.1 sequence type=predicted peptide gene model=Glyma02g16630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVPCSVTSPSSPFTAIIPRHTFFSRSSSLPLRRARAFPINSLSNGSSSQFNQQLFRPRDPPQPRTLFPGGYKRPELKVPTLVLQLDPAEVLSADTDALALIDRAVSKWVGIVVLASNEASGGKLYEAACSLKSLIQDRAYLLVAERVDIAAATAASGVLLSDQGLPTVVARNTMLDSKSELVVLPLVARIVQTVDAAVNASKSEGADFLIYGGGDLNRVGQEVGSLYESVKIPIFVSCVKNNMSYADASGLLASGASGFVTSLANFGLFGDEFLHKLFGTVYASDDGGRMSENKLNVDNGFQSETEVVAGFVKLEDREKLLIETERLVLNEAIEVIKRAAPLMEEVSLLNDAVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKEGVVPTTNEITFLRYTDLDIEQQQCERHPDGQYICYIPAPILKEMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTGSEIAFLRYSQQWKKKAVFVLNKADIYQNNHELEEAMSFIKDNIQRLLNTEDVILYPVSARSALEAKLMATTNVGRLNEELSTSDSHYGAISFFELENFLYSFLDGSTIPGMDRMRLKLETPVAIADRLISACETLVTQDYRYAKQDLAAVEDIVNNVNDFALNMVTESLSWRRQTLSLIETTKSRVIELVEANLQLSNFDIIASYAFKGEKNVMPTTSRIQNDIIGPAVSAVQKILEEYGNWLYSKYTQQGRLYKESFEKRWPSLSHESSQINFETDQLLKKVDQAGSQVIDNFSSNAVSKSFEQEVREMILGTFGQLGVAGLSASLLTSVLQTTLDDLLALGICSAGGYLAISTFPARRQKVIDKVKRKADTLAYELEEAMKKDLTEAIENLDTFVKVLSKPYQDEAQNRLNRLVEIQEELSNVEKKLRTLQIDIQNLNVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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