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Report for Sequence Feature Glyma02g16630
Feature Type: gene_model
Chromosome: Gm02
Start: 15000581
stop: 15007993
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g16630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G03160 AT
Annotation by Michelle Graham. TAIR10: FZO-like | chr1:761321-766053 FORWARD LENGTH=912
SoyBase E_val: 0 ISS
GO:0006364 GO-bp
Annotation by Michelle Graham. GO Biological Process: rRNA processing
SoyBase N/A ISS
GO:0009228 GO-bp
Annotation by Michelle Graham. GO Biological Process: thiamine biosynthetic process
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0009902 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast relocation
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0010207 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosystem II assembly
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0015979 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis
SoyBase N/A ISS
GO:0016226 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly
SoyBase N/A ISS
GO:0034660 GO-bp
Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process
SoyBase N/A ISS
GO:0035304 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation
SoyBase N/A ISS
GO:0042793 GO-bp
Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0048481 GO-bp
Annotation by Michelle Graham. GO Biological Process: ovule development
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0031969 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast membrane
SoyBase N/A ISS
GO:0003924 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTPase activity
SoyBase N/A ISS
GO:0004789 GO-mf
Annotation by Michelle Graham. GO Molecular Function: thiamine-phosphate diphosphorylase activity
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG0448
KOG
Mitofusin 1 GTPase, involved in mitochondrila biogenesis
JGI ISS
PTHR11649 Panther
MSS1/TRME-RELATED GTP-BINDING PROTEIN
JGI ISS
PTHR11649:SF44 Panther
JGI ISS
PF01926 PFAM
GTPase of unknown function
JGI ISS
UniRef100_G7IED3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein engA n=1 Tax=Medicago truncatula RepID=G7IED3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JFA7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFA7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g16630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g16630
Paralog Evidence Comments
Glyma10g03190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g16630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g147400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g16630
Coding sequences of Glyma02g16630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g16630.1 sequence type=CDS gene model=Glyma02g16630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTACCTTGTTCCGTCACATCCCCTTCGTCACCGTTCACTGCAATCATCCCACGCCACACCTTCTTCTCTCGCTCTTCCTCTCTTCCCCTTCGCCGCGCACGTGCTTTTCCCATAAACTCGCTCTCCAATGGCTCCTCCTCCCAGTTCAACCAGCAACTCTTCCGGCCCCGCGACCCGCCGCAGCCCCGAACCCTCTTCCCCGGCGGCTACAAGAGGCCCGAGCTCAAGGTCCCCACTCTCGTCCTCCAACTCGATCCCGCCGAGGTTCTCAGCGCCGACACCGACGCCTTGGCTTTGATCGACAGGGCCGTCTCCAAATGGGTCGGAATCGTCGTCCTCGCTAGCAACGAAGCCAGCGGCGGCAAGCTCTACGAGGCTGCATGCTCGTTGAAGTCCCTGATTCAAGACCGCGCCTATTTGCTTGTCGCTGAGCGCGTTGATATCGCCGCCGCCACCGCCGCTAGCGGAGTTTTGCTCTCTGACCAAGGCCTTCCCACCGTTGTTGCTAGAAATACGATGTTGGATTCAAAGTCTGAATTGGTGGTTCTTCCCTTGGTTGCTAGGATTGTTCAAACCGTGGATGCTGCGGTGAATGCGTCTAAATCAGAAGGTGCTGATTTTCTTATATATGGTGGTGGTGACCTGAATCGTGTTGGTCAGGAAGTTGGTTCTCTGTATGAGAGTGTGAAGATTCCTATTTTTGTCTCGTGTGTGAAAAACAACATGTCTTATGCTGATGCGTCGGGTTTGCTTGCCTCTGGTGCTAGTGGTTTTGTTACTAGTTTGGCGAATTTTGGTTTGTTTGGCGATGAGTTCTTGCACAAACTATTTGGCACTGTGTATGCAAGTGATGATGGTGGGAGGATGAGTGAGAATAAACTGAATGTAGATAATGGTTTTCAGAGTGAGACAGAGGTTGTGGCTGGGTTTGTTAAGCTGGAGGATAGGGAAAAACTATTAATTGAAACAGAGAGATTGGTGTTGAATGAAGCTATTGAAGTTATCAAGAGGGCTGCACCTCTGATGGAGGAGGTTTCACTTCTTAATGATGCGGTTTCTCAAATTGATGAGCCATTCTTACTGGTTATAGTGGGGGAATTCAACTCTGGTAAATCTACTGTGATTAATGCGCTTCTTGGAGAAAGATATCTCAAAGAGGGAGTTGTTCCAACAACTAATGAGATCACATTTTTACGATATACTGACTTAGATATTGAACAACAACAGTGTGAAAGGCATCCAGATGGTCAATATATTTGCTACATTCCTGCTCCAATTCTTAAGGAGATGACCATTGTTGATACACCTGGAACTAATGTGATTCTTCAGAGGCAGCAGCGTCTTACAGAGGAATTTGTACCCCGTGCAGATTTACTTCTTTTTGTCATTTCTGCTGATCGTCCTTTAACTGGAAGTGAGATTGCTTTTCTTCGTTATTCTCAGCAGTGGAAAAAGAAAGCGGTTTTTGTCTTGAATAAAGCTGACATATATCAGAATAATCATGAGCTTGAGGAAGCAATGTCCTTCATTAAGGACAATATACAGAGATTGCTGAATACTGAAGATGTCATATTATATCCTGTATCTGCTCGGTCTGCTCTTGAAGCAAAACTTATGGCTACCACCAATGTTGGGAGGCTAAATGAAGAATTATCAACCTCTGATTCTCATTATGGTGCCATCAGTTTCTTTGAACTTGAAAACTTCTTGTATAGCTTTCTAGATGGGTCAACAATCCCAGGAATGGACAGAATGAGGCTCAAACTTGAAACACCTGTTGCAATTGCAGATAGACTAATTTCTGCATGTGAAACTCTTGTGACACAAGACTACCGATATGCCAAGCAGGATTTGGCTGCAGTAGAAGACATTGTTAATAATGTAAATGATTTTGCTTTGAATATGGTAACTGAGAGCCTTTCTTGGAGGAGACAAACTCTGTCTTTGATTGAAACTACAAAATCACGTGTCATAGAGCTTGTTGAAGCTAATCTGCAATTGTCAAATTTTGATATTATTGCTTCATATGCTTTCAAAGGAGAAAAAAATGTAATGCCTACTACCTCAAGGATTCAGAATGACATAATTGGTCCTGCTGTCTCCGCTGTCCAGAAAATTCTAGAAGAATACGGAAATTGGTTATATTCCAAATATACCCAACAAGGGAGACTATACAAGGAATCCTTTGAAAAACGATGGCCCTCCTTGAGCCATGAAAGTAGTCAGATAAATTTTGAGACGGACCAGTTGCTAAAGAAAGTGGATCAAGCTGGCAGCCAGGTGATTGACAATTTCAGCAGCAATGCAGTTTCTAAGTCATTTGAGCAAGAAGTACGGGAAATGATTTTGGGGACTTTTGGTCAACTAGGTGTGGCTGGTTTATCTGCTTCGCTACTGACATCTGTGCTGCAAACCACCTTGGACGATCTTCTTGCTCTTGGCATTTGTTCTGCTGGCGGGTATCTAGCTATATCAACTTTTCCAGCTCGTAGGCAGAAGGTGATAGATAAGGTGAAAAGAAAAGCAGATACCTTGGCATATGAACTTGAAGAGGCCATGAAGAAGGATTTGACTGAAGCCATAGAAAATTTGGATACCTTTGTGAAAGTCCTTAGCAAACCTTACCAAGATGAAGCGCAGAATAGACTTAACAGGCTAGTAGAGATTCAAGAAGAATTGTCAAATGTTGAGAAAAAACTTAGAACGCTACAAATTGACATTCAAAATCTTAACGTGTCATGA
Predicted protein sequences of Glyma02g16630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g16630.1 sequence type=predicted peptide gene model=Glyma02g16630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVPCSVTSPSSPFTAIIPRHTFFSRSSSLPLRRARAFPINSLSNGSSSQFNQQLFRPRDPPQPRTLFPGGYKRPELKVPTLVLQLDPAEVLSADTDALALIDRAVSKWVGIVVLASNEASGGKLYEAACSLKSLIQDRAYLLVAERVDIAAATAASGVLLSDQGLPTVVARNTMLDSKSELVVLPLVARIVQTVDAAVNASKSEGADFLIYGGGDLNRVGQEVGSLYESVKIPIFVSCVKNNMSYADASGLLASGASGFVTSLANFGLFGDEFLHKLFGTVYASDDGGRMSENKLNVDNGFQSETEVVAGFVKLEDREKLLIETERLVLNEAIEVIKRAAPLMEEVSLLNDAVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKEGVVPTTNEITFLRYTDLDIEQQQCERHPDGQYICYIPAPILKEMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTGSEIAFLRYSQQWKKKAVFVLNKADIYQNNHELEEAMSFIKDNIQRLLNTEDVILYPVSARSALEAKLMATTNVGRLNEELSTSDSHYGAISFFELENFLYSFLDGSTIPGMDRMRLKLETPVAIADRLISACETLVTQDYRYAKQDLAAVEDIVNNVNDFALNMVTESLSWRRQTLSLIETTKSRVIELVEANLQLSNFDIIASYAFKGEKNVMPTTSRIQNDIIGPAVSAVQKILEEYGNWLYSKYTQQGRLYKESFEKRWPSLSHESSQINFETDQLLKKVDQAGSQVIDNFSSNAVSKSFEQEVREMILGTFGQLGVAGLSASLLTSVLQTTLDDLLALGICSAGGYLAISTFPARRQKVIDKVKRKADTLAYELEEAMKKDLTEAIENLDTFVKVLSKPYQDEAQNRLNRLVEIQEELSNVEKKLRTLQIDIQNLNVS*