Glyma02g16590 - SoyBase

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Report for Sequence Feature Glyma02g16590

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14966394
stop:	14970945
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63190	AT	Annotation by Michelle Graham. TAIR10: ribosome recycling factor, chloroplast precursor \| chr3:23342861-23344640 REVERSE LENGTH=275	SoyBase	E_val: 5.00E-114	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019408	GO-bp	Annotation by Michelle Graham. GO Biological Process: dolichol biosynthetic process	SoyBase	N/A	ISS
GO:0032544	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid translation	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
KOG4759	KOG	Ribosome recycling factor	JGI		ISS
PTHR20982	Panther	RIBOSOME RECYCLING FACTOR	JGI		ISS
PF01765	PFAM	Ribosome recycling factor	JGI		ISS
UniRef100_B7FI72	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosome-recycling factor n=1 Tax=Medicago truncatula RepID=B7FI72_MEDTR	SoyBase	E_val: 3.00E-128	ISS
UniRef100_C6TCH7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCH7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g16590 not represented in the dataset	Glyma02g16590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16590

Paralog	Evidence	Comments
Glyma10g03241	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g147000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16590

Limit To All Plant Sequences

>Glyma02g16590.2   sequence type=transcript   gene model=Glyma02g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTTCTTAAAAAATAATTTTTGGGAATGAATAAATTGGTAAAATTGTAATAACTCCTGGTTGAGCATGGTTGTGGCCTTAGCAATTTAGGGGAAGAGAAGAAAGTGCTGAAAAGAGAAAGTTGTTATCCACAAGACAACGTCATCAACATTACACAAGGCGCAGGGTGGTCTCTGTGATGGCAACCTCTTTCTCTCCGACAGCCTCTGTCGGCTCCATCATCTTCCAAAACCCTCCCAAAGGCCTTCTTCTTCTCTCCCAGCAGCAGCAACAACGCTCCTTCGCCTCTTCTGCAAGCTATGCAACTCTCAAGCTCCCTCGCGCCTTCGCACTTTCTCCAAGACCCCTCCTTTCCAAAGGGAGAACAACACTTGTGAGGGCTGCTACTATCGAAGAAATTGAAGCCGAAAAAGCCGCAATTGAAAAAGATGCTAAAACCAGGATGGATAGGACTATTGATAATGTCCGTACAAATTTCAGTTCCATAAGGACAGGGAGAGCAAACCCATCCATGCTTGACAAAATTCAGGTGGAATACTATGGAAGCCCAGTTAGCTTGAAGAGCATCGCTCAAATTAGCACTCCTGATGCCAGTTCTCTTTTGGTACAGCCATATGACAAATCAAGCTTGAAGGCTATAGAGAAAGCCATAGTTAGCTCTGATCTTGGTATGACTCCAAATAATGATGGAGAATTGATACGACTGAGCATCCCACAGTTGACATCTGATAGGAGGAAGGAACTATCAAAGATAGTGGCTAAACAAGCTGAAGAAGGGAAGGTGGCTTTGAGGAATATAAGAAGAGATGCATTAAAAGCTTATGATAAACTTGAGAAGGAGAAAAAGCTCTCCGAAGATAATGTGAAGGATTTGTCAAGTGATTTGCAGCTGACAGATGAGTATATGAAGAAAGTTGACACCATCTTCAAACAGAAAGAAAAGGAGTTGCTCACAGTTTGATGCTTTGTTGCAAAAAGTAAATGCTGAGTTCTATCTAAAGAAGGTCAAATTTTGTGCCTACTTTGCTCCAGGGTTGGATGATGAATGCGCATGTTCATTGGTTATACAGAAGACAAACTTTTGAATTAAATAGATGTTTTTCAAATTGGAAAGGTGAGTTCATGTCTGTAAATTGGATTTATTTCACGTAATTCTTCATTGAAATTAGACCCTCACCGAACCATTGTTGTCAAACTCTTGAGGCTATGGTAGACTCTTACAAGTTTATGATTCTAGGTATAAAAATCAAGTTAGCTGACTGTCAGACTCATTTATGGATAACAGGGTACGTTCAGGAAAATAACTTAATTAAGCACTTAGTGATTAAGTAC

>Glyma02g16590.3   sequence type=transcript   gene model=Glyma02g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTTCTTAAAAAATAATTTTTGGGAATGAATAAATTGGTAAAATTGTAATAACTCCTGGTTGAGCATGGTTGTGGCCTTAGCAATTTAGGGGAAGAGAAGAAAGTGCTGAAAAGAGAAAGTTGTTATCCACAAGACAACGTCATCAACATTACACAAGGCGCAGGGTGGTCTCTGTGATGGCAACCTCTTTCTCTCCGACAGCCTCTGTCGGCTCCATCATCTTCCAAAACCCTCCCAAAGGCCTTCTTCTTCTCTCCCAGCAGCAGCAACAACGCTCCTTCGCCTCTTCTGCAAGCTATGCAACTCTCAAGCTCCCTCGCGCCTTCGCACTTTCTCCAAGACCCCTCCTTTCCAAAGGGAGAACAACACTTGTGAGGGCTGCTACTATCGAAGAAATTGAAGCCGAAAAAGCCGCAATTGAAAAAGATGCTAAAACCAGGATGGATAGGACTATTGATAATGTCCGTACAAATTTCAGTTCCATAAGGACAGGGAGAGCAAACCCATCCATGCTTGACAAAATTCAGGTGGAATACTATGGAAGCCCAGTTAGCTTGAAGAGCATCGCTCAAATTAGCACTCCTGATGCCAGTTCTCTTTTGGTACAGCCATATGACAAATCAAGCTTGAAGGCTATAGAGAAAGCCATAGTTAGCTCTGATCTTGGTATGACTCCAAATAATGATGGAGAATTGATACGACTGAGCATCCCACAGTTGACATCTGATAGGAGGAAGGTGGCTTTGAGGAATATAAGAAGAGATGCATTAAAAGCTTATGATAAACTTGAGAAGGAGAAAAAGCTCTCCGAAGATAATGTGAAGGATTTGTCAAGTGATTTGCAGAAGCTGACAGATGAGTATATGAAGAAAGTTGACACCATCTTCAAACAGAAAGAAAAGGAGTTGCTCACAGTTTGATGCTTTGTTGCAAAAAGTAAATGCTGAGTTCTATCTAAAGAAGGTCAAATTTTGTGCCTACTTTGCTCCAGGGTTGGATGATGAATGCGCATGTTCATTGGTTATACAGAAGACAAACTTTTGAATTAAATAGATGTTTTTCAAATTGGAAAGGTGAGTTCATGTCTGTAAATTGGATTTATTTCACGTAATTCTTCATTGAAATTAGACCCTCACCGAACCATTGTTGTCAAACTCTTGAGGCTATGGTAGACTCTTACAAGTTTATGATTCTAGGTATAAAAATCAAGTTAGCTGACTGTCAGACTCATTTATGGATAACAGGGTACGTTCAGGAAAATAACTTAATTAAGCACTTAGTGATTAAGTAC

Coding sequences of Glyma02g16590

Limit To All Plant Sequences

>Glyma02g16590.1   sequence type=CDS   gene model=Glyma02g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCTCTTTCTCTCCGACAGCCTCTGTCGGCTCCATCATCTTCCAAAACCCTCCCAAAGGCCTTCTTCTTCTCTCCCAGCAGCAGCAACAACGCTCCTTCGCCTCTTCTGCAAGCTATGCAACTCTCAAGCTCCCTCGCGCCTTCGCACTTTCTCCAAGACCCCTCCTTTCCAAAGGGAGAACAACACTTGTGAGGGCTGCTACTATCGAAGAAATTGAAGCCGAAAAAGCCGCAATTGAAAAAGATGCTAAAACCAGGATGGATAGGACTATTGATAATGTCCGTACAAATTTCAGTTCCATAAGGACAGGGAGAGCAAACCCATCCATGCTTGACAAAATTCAGGTGGAATACTATGGAAGCCCAGTTAGCTTGAAGAGCATCGCTCAAATTAGCACTCCTGATGCCAGTTCTCTTTTGGTACAGCCATATGACAAATCAAGCTTGAAGGCTATAGAGAAAGCCATAGTTAGCTCTGATCTTGGTATGACTCCAAATAATGATGGAGAATTGATACGACTGAGCATCCCACAGTTGACATCTGATAGGAGGAAGGAACTATCAAAGATAGTGGCTAAACAAGCTGAAGAAGGGAAGGTGGCTTTGAGGAATATAAGAAGAGATGCATTAAAAGCTTATGATAAACTTGAGAAGGAGAAAAAGCTCTCCGAAGATAATGTGAAGGATTTGTCAAGTGATTTGCAGAAGCTGACAGATGAGTATATGAAGAAAGTTGACACCATCTTCAAACAGAAAGAAAAGGAGTTGCTCACAGTTTGA

>Glyma02g16590.2   sequence type=CDS   gene model=Glyma02g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCTCTTTCTCTCCGACAGCCTCTGTCGGCTCCATCATCTTCCAAAACCCTCCCAAAGGCCTTCTTCTTCTCTCCCAGCAGCAGCAACAACGCTCCTTCGCCTCTTCTGCAAGCTATGCAACTCTCAAGCTCCCTCGCGCCTTCGCACTTTCTCCAAGACCCCTCCTTTCCAAAGGGAGAACAACACTTGTGAGGGCTGCTACTATCGAAGAAATTGAAGCCGAAAAAGCCGCAATTGAAAAAGATGCTAAAACCAGGATGGATAGGACTATTGATAATGTCCGTACAAATTTCAGTTCCATAAGGACAGGGAGAGCAAACCCATCCATGCTTGACAAAATTCAGGTGGAATACTATGGAAGCCCAGTTAGCTTGAAGAGCATCGCTCAAATTAGCACTCCTGATGCCAGTTCTCTTTTGGTACAGCCATATGACAAATCAAGCTTGAAGGCTATAGAGAAAGCCATAGTTAGCTCTGATCTTGGTATGACTCCAAATAATGATGGAGAATTGATACGACTGAGCATCCCACAGTTGACATCTGATAGGAGGAAGGAACTATCAAAGATAGTGGCTAAACAAGCTGAAGAAGGGAAGGTGGCTTTGAGGAATATAAGAAGAGATGCATTAAAAGCTTATGATAAACTTGAGAAGGAGAAAAAGCTCTCCGAAGATAATGTGAAGGATTTGTCAAGTGATTTGCAGCTGACAGATGAGTATATGAAGAAAGTTGACACCATCTTCAAACAGAAAGAAAAGGAGTTGCTCACAGTTTGA

>Glyma02g16590.3   sequence type=CDS   gene model=Glyma02g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCTCTTTCTCTCCGACAGCCTCTGTCGGCTCCATCATCTTCCAAAACCCTCCCAAAGGCCTTCTTCTTCTCTCCCAGCAGCAGCAACAACGCTCCTTCGCCTCTTCTGCAAGCTATGCAACTCTCAAGCTCCCTCGCGCCTTCGCACTTTCTCCAAGACCCCTCCTTTCCAAAGGGAGAACAACACTTGTGAGGGCTGCTACTATCGAAGAAATTGAAGCCGAAAAAGCCGCAATTGAAAAAGATGCTAAAACCAGGATGGATAGGACTATTGATAATGTCCGTACAAATTTCAGTTCCATAAGGACAGGGAGAGCAAACCCATCCATGCTTGACAAAATTCAGGTGGAATACTATGGAAGCCCAGTTAGCTTGAAGAGCATCGCTCAAATTAGCACTCCTGATGCCAGTTCTCTTTTGGTACAGCCATATGACAAATCAAGCTTGAAGGCTATAGAGAAAGCCATAGTTAGCTCTGATCTTGGTATGACTCCAAATAATGATGGAGAATTGATACGACTGAGCATCCCACAGTTGACATCTGATAGGAGGAAGGTGGCTTTGAGGAATATAAGAAGAGATGCATTAAAAGCTTATGATAAACTTGAGAAGGAGAAAAAGCTCTCCGAAGATAATGTGAAGGATTTGTCAAGTGATTTGCAGAAGCTGACAGATGAGTATATGAAGAAAGTTGACACCATCTTCAAACAGAAAGAAAAGGAGTTGCTCACAGTTTGA

Predicted protein sequences of Glyma02g16590

Limit To All Plant Sequences

>Glyma02g16590.1   sequence type=predicted peptide   gene model=Glyma02g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSFSPTASVGSIIFQNPPKGLLLLSQQQQQRSFASSASYATLKLPRAFALSPRPLLSKGRTTLVRAATIEEIEAEKAAIEKDAKTRMDRTIDNVRTNFSSIRTGRANPSMLDKIQVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKVALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKELLTV*

>Glyma02g16590.2   sequence type=predicted peptide   gene model=Glyma02g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSFSPTASVGSIIFQNPPKGLLLLSQQQQQRSFASSASYATLKLPRAFALSPRPLLSKGRTTLVRAATIEEIEAEKAAIEKDAKTRMDRTIDNVRTNFSSIRTGRANPSMLDKIQVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKVALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQLTDEYMKKVDTIFKQKEKELLTV*

>Glyma02g16590.3   sequence type=predicted peptide   gene model=Glyma02g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSFSPTASVGSIIFQNPPKGLLLLSQQQQQRSFASSASYATLKLPRAFALSPRPLLSKGRTTLVRAATIEEIEAEKAAIEKDAKTRMDRTIDNVRTNFSSIRTGRANPSMLDKIQVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKVALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKELLTV*

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