Report for Sequence Feature Glyma02g16580
Feature Type: gene_model
Chromosome: Gm02
Start: 14950891
stop: 14957165
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g16580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G63180 AT
Annotation by Michelle Graham. TAIR10: TIC-like | chr3:23336318-23340161 REVERSE LENGTH=978
SoyBase E_val: 1.00E-62 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
UniRef100_G7IEC0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein TIME FOR COFFEE n=1 Tax=Medicago truncatula RepID=G7IEC0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002336D4D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002336D4D related cluster n=1 Tax=unknown RepID=UPI0002336D4D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g16580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g16580
Paralog Evidence Comments
Glyma10g03250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g16580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g146900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g16580
Coding sequences of Glyma02g16580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g16580.1 sequence type=CDS gene model=Glyma02g16580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATAGAACCAGAGAATCCAGAAGATCATCCATGGCCACCTCCACCAACGGATTTCCCAGACGCAGACATCGAACTATTGCTCTCAGAGACTCTTCCGAGGAAGGTGCTGTGGAGTTGAGAGAAGGTGCGAGTAAGAGAGGAAGGAATCGAGATAGGGATAGGGATTCGGCGAACAGGAGCAAGAGGAGGAGAGGCTCTCACTCGCAAAGCACCGAAGAGAGCGTCGGAAACGAACAAGACGTCGACGTTGTGGACGTTGGCGTTTCTAAGATCCGTTCCCCTAATTATACGACATCGTCGTTCGCCTCCGATCACAACCATCGCCGGAGCTTCACGCCGGCGAAACCTCCGTCGTTCAAGATAACGGATGAGATGATCGGCGTGACCGTTCCGAGAAAGGCTCGTTCAGCATCTGCGAAAAGGTCTCACGAAAGTTGGATTTCCGCAAGCAGCGGTGGGGAGGAGCTGAATTTCCGGCAACGGTCGAATTCCCCCGGAGGACAGAGTGTTGAACCGGCCTCACCTTCTTCTTCGAATGTTTCTCGTAGGAAGAAGATGAAAGAGATTGAACCTGTTTCTAAGCCATCAAAATCGTCTTCGTCAGACCTCGAGATTGAGATAGCTGAGCTTCTGTATGGTTTGAAGACTTCGAAGAGCCACGAGTCTTCTAAAAAGTTTGAAGCAAGCGTCAGTCCCTCTGATGATGGTGAGAAGAAGAAAATGGAAGACAACGACAATTCTTCCACCCTTGTTCCAAATAATTCAACTAAAGAGTTAAGCAGGATTCCGATTGAGCAACATGCTGATGTGGATTATCATGTTTGTCCATCATTAGAGGCACCAAAAGAGGACATTGGGGAAGACAGAATGAATTCAAGTGCTGGGTTTGGGGATGCTTCAGCAGATGGAAGATCGGTTTCCCCTACTAAGGAATCGCCATCATGCTCCAAGTTGGATGCTGAGAAACCATATTCATCTTCAAACAGAGTGATGTCTGCTTTTCCAGAGGCCAAAGCCCAACGAGTAGGCAAGTTTGAGATAGATCTGATGGCTCCTCCTCCTATGGGGCTGTCCCCAGAAGTGGATGACTTGTCAAGGGGTGATTTCATATCAGAAACTAAAGCTTTGGCACCGGATGTGGAAATGAAGAAGGAAGATAGTGTCAAGGTGGAAAGACCAGTTAAGAAGGAGAAAACTCCAGAAGAAATTGAAGAGGCAAAAATGGTAACATTTAAGGAGAAGTTTGATGTGCTAAAACATGATTTCGAGAAGCAAAACAATGCCAATGACATAAAGACAAACAATAAATTGGAAGAGCAGGATGGGAATAGGGAACTAGCTACTATATCATCAAATCCCAAAGAAGAGATAACCGTTCAATCTACTTCAATGCCTTTATCAACAGCTGAATCAGGACGGCAGAGCAGTCTCTCTCCCATTGGACACAAGCCGCCCTTGCAGCCAGTTTCAAAGACGGACAAAACCACAGGATCATTGACACTAAAGCATGCGAATTTTGTCCTCTCTCAACGGCAACCCAAGAGATGTGCAACCCATTATTACATTGCTTGTAACATCTTACACCAGCAGTGTACAAAGATGAAGCCCCCTTTGCCAGCAGCTATTGGCTCTGGTTCTGTGTGTGACACAAAGCACAATAATGTCAACTGTGTGCCCTATGCAGAAAGTATGGCCTTTGGGAAGCAATCTCAAAAACACTTACCAATTGTAAACCAAAATGCTTCACAAGAGAAAGGGTGGGCTGCGACCAGCATTCCTAGTCTTACTGCAGCCAAAGGTTCTAATAATGTCAAACCAATGGATTCAGCTCATAGGGTGCAGCTTGTGCTCCAGCAAGGTCCAAATCCTGGTCCAACTGGTAATCTAGTGCATGGTCCTGCTTTCCTCTATCCTCCAGGCCAGCATCAAGCGTCAGTTACAGCAACTTCTAATCAGGCAGGAGCTGTGAATTCCCCTAACAGCACTTCCTCATATAATAAATCCCATAGTTCAGTTGGCGGATCTCCTGGTACCTCCTCAACTTTGCCAGTAGTTGCTCCTGGAATAAGCTTTAGCTACCCAAATTTTTCAGCCAATGGTTCTTCTCCATATATGACAATAGTTCACAATAATGGGTATTCATTCCCTTTTTCAACTTCTCTTGGAGCAACTGCAGCAATCAGAGGCGCAAGCCCTCCACAAGCAACACATGTGCTTAGTGGGCCTTTCTACTCTTCTCAAATGTTCCATCCACAGCAACACCCTCAGTCACAAGCACTGGTTCAACCAAGTTATCTTAATGCAAGCACATCAAGTAGTTCGTCATCTCATAAACAGTCACCAGGTGCACAAGTTAATGGCAGTAATATTTTGACCTCTACAACTATGGAACTGCAGTCACAAAAGCGACAGACTTCACTGTCTCATCTTCGCAAGCATGAGACTGAGATGGGTGGAGGGAATGCACCTTCAGTTGCTAATCGAACATCTTACTCACAGAAGAACGTGCATGGCCAAAACTTTACAATTCCAGTGCAACCAGTGAACTTTTCTTTTAAGCCATCTGCAACATCGGATATTGTTGGCAATGGTGGATGTTTTGGTGACAAACAACAGCAGCAACAGGCTTTAAAGGGAGGAGTAGAGAATATACCATCTCAAGCATTTGCAATATCATTTGCTGCATTTAATGGGACCAGTGTTCCTTCAAACCTTAACTTCTCATCCATGGCACAGAATCCTGTGATACTTCAAAGCCTGCCTGATATGGCATGGCAAGGATATCAAGCTGCAAGCATTCCTCAGACTACTCAGCAAAAGACTTGTTCAATAACTGAAGCAAAGAGTGGAGGAAATTCTTCACACCAAGATGATGAAAAGAAAATCACTCATGCTAAGTCTTCCAGCAATGGGCCAACGACCCTTGTTTTTGATAATTCATCTAAGAATCTTAACTTTGTGCTATCTACTACGAATGGAAACTGGTCTAATCACACCATTCCTTCAACTGCAATAACAAGTGTGCCACTCTCTAGTAATGCTTCAAGTTCTCAACAGCCACCGCATTTGCTTCAGCTTCCAAAGCAGCATGCTATGCAACAGCAGCAAGCTGCTATGGCATCTCGATATAAAGCATCATCTGCCAATAGCACTCCTGCTGCAAAATTTGCAAACAATGCCCCCGTTTTCTCACAAACTCCTTCTCAATGCAGAAGTTCTAACCAAGCTTCTCACTCTAAGGCCTCGGGTAGAACTACAGATTCTCATGTTCATCACACATCTATCATAACATCAAATGCTCCAACCCTCAAAAGTTTTTCCCAGGAACAAGGGAGAGTTTTGCCAGGTCATATGCAAATTTCTTTTGGGGGAAATTACATAACGCCCCTGCCACCCCAAGGGCAACCACTACTCAGTAACAACCAGCCTTTGTGTACAACAGCTCAAGGAACTCCATATAGTGGGGCCAATGCAAAGTCAAATTTGGAAGGAAGTAAAGCTAGTTCGTCGGTGAACGCATCACAACTGCAACAAACTGAAAATTCAGCTGGGAGTGGCCAAAAATCTTCACCAGTTTGTGGGAGAAATGTCCCATCAATATTGAGTTCATGCCCCAGCCACCTATCAGAGCTAAAGTATTAG
Predicted protein sequences of Glyma02g16580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g16580.1 sequence type=predicted peptide gene model=Glyma02g16580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDRTRESRRSSMATSTNGFPRRRHRTIALRDSSEEGAVELREGASKRGRNRDRDRDSANRSKRRRGSHSQSTEESVGNEQDVDVVDVGVSKIRSPNYTTSSFASDHNHRRSFTPAKPPSFKITDEMIGVTVPRKARSASAKRSHESWISASSGGEELNFRQRSNSPGGQSVEPASPSSSNVSRRKKMKEIEPVSKPSKSSSSDLEIEIAELLYGLKTSKSHESSKKFEASVSPSDDGEKKKMEDNDNSSTLVPNNSTKELSRIPIEQHADVDYHVCPSLEAPKEDIGEDRMNSSAGFGDASADGRSVSPTKESPSCSKLDAEKPYSSSNRVMSAFPEAKAQRVGKFEIDLMAPPPMGLSPEVDDLSRGDFISETKALAPDVEMKKEDSVKVERPVKKEKTPEEIEEAKMVTFKEKFDVLKHDFEKQNNANDIKTNNKLEEQDGNRELATISSNPKEEITVQSTSMPLSTAESGRQSSLSPIGHKPPLQPVSKTDKTTGSLTLKHANFVLSQRQPKRCATHYYIACNILHQQCTKMKPPLPAAIGSGSVCDTKHNNVNCVPYAESMAFGKQSQKHLPIVNQNASQEKGWAATSIPSLTAAKGSNNVKPMDSAHRVQLVLQQGPNPGPTGNLVHGPAFLYPPGQHQASVTATSNQAGAVNSPNSTSSYNKSHSSVGGSPGTSSTLPVVAPGISFSYPNFSANGSSPYMTIVHNNGYSFPFSTSLGATAAIRGASPPQATHVLSGPFYSSQMFHPQQHPQSQALVQPSYLNASTSSSSSSHKQSPGAQVNGSNILTSTTMELQSQKRQTSLSHLRKHETEMGGGNAPSVANRTSYSQKNVHGQNFTIPVQPVNFSFKPSATSDIVGNGGCFGDKQQQQQALKGGVENIPSQAFAISFAAFNGTSVPSNLNFSSMAQNPVILQSLPDMAWQGYQAASIPQTTQQKTCSITEAKSGGNSSHQDDEKKITHAKSSSNGPTTLVFDNSSKNLNFVLSTTNGNWSNHTIPSTAITSVPLSSNASSSQQPPHLLQLPKQHAMQQQQAAMASRYKASSANSTPAAKFANNAPVFSQTPSQCRSSNQASHSKASGRTTDSHVHHTSIITSNAPTLKSFSQEQGRVLPGHMQISFGGNYITPLPPQGQPLLSNNQPLCTTAQGTPYSGANAKSNLEGSKASSSVNASQLQQTENSAGSGQKSSPVCGRNVPSILSSCPSHLSELKY*