Report for Sequence Feature Glyma02g16560
Feature Type: gene_model
Chromosome: Gm02
Start: 14938939
stop: 14940735
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g16560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G28150 AT
Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF868) | chr5:10135826-10136695 FORWARD LENGTH=289
SoyBase E_val: 6.00E-122 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF05910 PFAM
Plant protein of unknown function (DUF868)
JGI ISS
UniRef100_I1JF98 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF98_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q84M57 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q84M57_ORYSJ
SoyBase E_val: 3.00E-131 ISS
Expression Patterns of Glyma02g16560
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g16560
Paralog Evidence Comments
Glyma10g03270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g16560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g146700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g16560
Coding sequences of Glyma02g16560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g16560.1 sequence type=CDS gene model=Glyma02g16560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGGAGTTTCCTTCTTGTTTTGGAGAAAATGGGGTTCAGATTGCTGACTCATCCTCATCAAGCACCACAAGAGCAGCTCAAAATGTGGTTACGTGTGTCTATCAGTGCAAATTAAGAGGCCGTTCATGCCTGATTACAGTCTGGTGGACAAAAACTCTGATGGGTCAAGGCTTGAGTGTGGGAATAGATGACTTGGGAAACCATTGCCTCTGCAAGGTGGAGATAAAGCCATGGCTCTTCTCGAAGAGAAAAGGGTCAAAGAATTTGGAGGTCCAATCTGGTAAAGTTGACATCTTTTGGGATTTGAGTTGTGCCAAGTTTGGTTCAGGGCCTGAGCCATTGGAGGGGTTCTACTTAGCGGTTGTGTTCAACAAGGAGATGGTGTTGCTCCTAGGGGATCTGAAAAAGGAGGCATGCAAGAAGATTGAGAGTGATTGTGCCTTTTCTCACTGTGGTGCTGTTTGCATTGCAAAGAGAGAGCACATTATTGGGAAGAAGTTTTATGGTGCAAAGGCTCAGTTTTGTGACAAGGGGCAGGTGCATGATGTCACAATTGAGTGTGACACTTTGGGGCCCAGCGATCCCTCTCTTGTGATTCGAATTGATAGCAAGACAGTGATGCAGGTGAAGCGTCTCAAGTGGAAGTTCCGAGGGAATCACACCATTTTGGTGGATGGTGTTCCGGTTGAAGTGTTTTGGGATGTGCACAGTTGGCTCTTTGGGAATGCTATGGGCAATGCAGTGTTCATGTTCCAAACATGCATTTCAAATGATAAGATGTGGGAAGGCCAATCAGTTTCTGATCCCTCTGCATTAACATGGGCTTCTTCTCAGCAGTTTAGGGATTCTCAATTGCAAGGCTTTGGGTTCTCTCTCATTTTTTATGTTTGGAAACATGAGTAA
Predicted protein sequences of Glyma02g16560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g16560.1 sequence type=predicted peptide gene model=Glyma02g16560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MREFPSCFGENGVQIADSSSSSTTRAAQNVVTCVYQCKLRGRSCLITVWWTKTLMGQGLSVGIDDLGNHCLCKVEIKPWLFSKRKGSKNLEVQSGKVDIFWDLSCAKFGSGPEPLEGFYLAVVFNKEMVLLLGDLKKEACKKIESDCAFSHCGAVCIAKREHIIGKKFYGAKAQFCDKGQVHDVTIECDTLGPSDPSLVIRIDSKTVMQVKRLKWKFRGNHTILVDGVPVEVFWDVHSWLFGNAMGNAVFMFQTCISNDKMWEGQSVSDPSALTWASSQQFRDSQLQGFGFSLIFYVWKHE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
