Glyma02g16530 - SoyBase

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Report for Sequence Feature Glyma02g16530

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14909716
stop:	14910330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05420	AT	Annotation by Michelle Graham. TAIR10: ovate family protein 12 \| chr1:1590073-1590753 FORWARD LENGTH=226	SoyBase	E_val: 2.00E-26	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04844	PFAM	Protein of unknown function, DUF623	JGI		ISS
UniRef100_G7IDP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene receptor n=1 Tax=Medicago truncatula RepID=G7IDP8_MEDTR	SoyBase	E_val: 2.00E-79	ISS
UniRef100_I1JF95	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF95_SOYBN	SoyBase	E_val: 1.00E-138	ISS

Expression Patterns of Glyma02g16530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16530

Paralog	Evidence	Comments
Glyma10g03300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g146400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g16530

Limit To All Plant Sequences

>Glyma02g16530.1   sequence type=CDS   gene model=Glyma02g16530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAGCACAAGAAATCTGAAGCACCTGAACATGTGTTGTTCAAATTCAGCTACTCCTGAATATGAATCTCCTCCATTGAGCCCCATAACTATTTCCTCAAATCACAATATCACTACTCCTTCTTCAATTATGATAAAGAACTTCAACTCTATCTATGACCACTCTTTCAGTTCCACGACCACCTTCTTTGAACCCGAACCCGAACCCGAACCCGCTGATTTCGCCACCGCCTTCGCCTCCCAACGCTTCTTCTTCTCCTCCCCCGGTCTCTCCAATTCCCTAGTTGAATACAACAATACCAACAAAAGTACTACTCAACACTTACCACCATTGTTGAGAGAAGATAGTGGTGATGTTGATGAGAAGAAGAAGAAGAAGGTGTTGTTCAAGGGGAGCGTGGCGGTGGCGACGTACTCGCCGGACCCTTACGTGGATTTCCGGCGGTCGATGCAGGAGATGGTGGAGGCGCGGCCGGAGCTGATGGACGTGAAGTCCAATTGGAACGTCCTTCACGAGCTTCTTCTATGCTATCTTGCGCTGAATCCAAAGAGCACTCACAAGTTCATTCTTGGAGCCTTCGCTGATCTCCTCGTTAGCCTCATGTCATTCTAG

Predicted protein sequences of Glyma02g16530

Limit To All Plant Sequences

>Glyma02g16530.1   sequence type=predicted peptide   gene model=Glyma02g16530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSTRNLKHLNMCCSNSATPEYESPPLSPITISSNHNITTPSSIMIKNFNSIYDHSFSSTTTFFEPEPEPEPADFATAFASQRFFFSSPGLSNSLVEYNNTNKSTTQHLPPLLREDSGDVDEKKKKKVLFKGSVAVATYSPDPYVDFRRSMQEMVEARPELMDVKSNWNVLHELLLCYLALNPKSTHKFILGAFADLLVSLMSF*

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