SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G63220 | AT | Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr3:23357540-23358577 REVERSE LENGTH=345 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR24414 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24414:SF184 | Panther | JGI | ISS | ||
| PF01344 | PFAM | Kelch motif | JGI | ISS | |
| UniRef100_A9PAC1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=A9PAC1_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JF89 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF89_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g16480 not represented in the dataset |
Glyma02g16480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g03350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g146000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g16480.4 sequence type=transcript gene model=Glyma02g16480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATTGAATTTTAATTAAAAGTAGGAAAAATAGTGGGTGTTTTTTTCATGAGCGAAGGTGTAAGTGAGACAGAACAATAACGACAACGTTAACATTGGCTTCTGTTGCAAGTTGTAAGTGGTAACTCTTTCAACTCAGCCGTGCAAGTTTTGTTGGCAGCGCACGAAGGAACCATCTTCTCTTCGTTTTCCTTTTTTTCTCAATCACACCCAAATCCCTTCCTTCCTTCTTCGCTATTGTCTTCTCTTTCAGGTGAGCTAAACACTAGCATAGTAGCATGCATCATTGTCATAAACTTGTTGAAACTGAAGTCAAAACTTGATCTTGTGTGCGATAAGGTGATGGACCTCTTTATTTACAAGGTGCACCTTCCAGTAAAGCAGGAGTAGGATAATTGTTGAACATAGATGAAAAGGTGATTGTTATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATCAGGTGCCTTGCATGGGTTCCCTTCTACCTCCATCCAAAGTTAGAGCTTGTCTCTCGTGCTTGGCGAGCAGTTGTCCGTGGCCCTGAACTATTTAAAGCTCGACAGGAGCTTGGTTCGTCAGAGGATTTGTTATGTGTCTGTGCTTTTGAACCAGAGAACTTATGGCAGTTGTATGACCCTCTGCGAGATCTCTGGATTACTCTTCCTGTTCTACCCTCAAGAATCAGGCACCTTTCACATTTTGGTGCTGTCTCCACTGCTGGAAAGTTGTTTGTAATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACGGGTGACCAAGATGGTTGTTTTGCAACAAATGAAGTCTGGTCGTATGACCCTGTAGTACGGCAATGGTCCCCCCGTGCAGCAATGCTCGTTCCCCGTTCTATGTTTGCATGCTGTGTTATGAATGGAAAAATAGTTGTGGCCGGGGGCTTCACTAGCTGCAGAAAGTCAATATCTCAAGCAGAAATGTATGACCCTGAGAAAGATGTTTGGATTCCAATGCCTGATCTTCATCGCACCCATAATTCAGCCTGTTCAGGAGTGGTGATTGGAGGAAAGGTGCATGTACTGCACAAGGATATGTCAACGGTGCAAGTTTTAGACAATGCAGGTCAGTGGACGGTTGAGGAATATGGGTGGCTCCATGGTCAAATGGCAGTTATCAGGGATGCCCTTTATGTAATAAGCTATGGATTAATCATCAAGCAAGACAAAAAAATGAGGAAGGTTGTAGGTTCAGCTTCCGAGTTTCGAAGGAGAATTGGATTTGCAATGATAGGTTTAGGTGATGAATTATATGTGATTGGAGGTGTCATTGGCCCTGACAGGTGGAATTGGGACATCAAGCCACTGTCTGATGTTGATGTTCTTACACTTGCGAGCGACAGACCGACGTGGCGCCAAGCAGCTCCAATGACACGGTGTGGTGGTACCATTCTTGGTTGTACACTGCTGAGAATTTAGGCTTTCACTTTCATGGCTTATGTGATATGTGTGCTCCTACTAAGGAATGTGAATTCCTTCAACAGGAGACAAAGAATTAGGTTGTTCAATGGCTTCTTTGAGTTGTATGTAAGCCATAATATTTGTCCTTGTTGTTTTGTTGACTATTATGTGGTAATATGATCAGGTAATATTTTCAAGCAAAACAATGAAGTTCATGCACTACTCTAAATAATATTAGTGGATATTACTTTCACTCATTTATATTCTTTACTTGATTCGCGAAGATGTTTAAGTATGCAATACTCTAAACTTATTAAGGGTACAACCTTACCTTAATAGATTTGAGTTGGAAGTGTTGGTTTTTGAAGGAAGAGAATCCATAGCAGTAACTGTCAATCATCCTTGTTGAATAGGGTTATGATGGGTGGGGCGCGAGGAGAGTTGAAAAAGATGCATTAAAGTCCCACGTTGAAGAAATACAAGGTTGGAAAAGGTAGCATCTACAATAAAAGAGAAAATAGGTTGCTGAGTAAGATGGTGACGTCCACGAGATCAATGGCTAATCAACATGGCCAGCGATGTGGATTTACTCTTGGAGTAAAACTCCCATTGTTTCTGAAAGT
>Glyma02g16480.3 sequence type=CDS gene model=Glyma02g16480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATCAGGTGCCTTGCATGGGTTCCCTTCTACCTCCATCCAAAGTTAGAGCTTGTCTCTCGTGCTTGGCGAGCAGTTGTCCGTGGCCCTGAACTATTTAAAGCTCGACAGGAGCTTGGTTCGTCAGAGGATTTGTTATGTGTCTGTGCTTTTGAACCAGAGAACTTATGGCAGTTGTATGACCCTCTGCGAGATCTCTGGATTACTCTTCCTGTTCTACCCTCAAGAATCAGGCACCTTTCACATTTTGGTGCTGTCTCCACTGCTGGAAAGTTGTTTGTAATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACGGGTGACCAAGATGGTTGTTTTGCAACAAATGAAGTCTGGTCGTATGACCCTGTAGTACGGCAATGGTCCCCCCGTGCAGCAATGCTCGTTCCCCGTTCTATGTTTGCATGCTGTGTTATGAATGGAAAAATAGTTGTGGCCGGGGGCTTCACTAGCTGCAGAAAGTCAATATCTCAAGCAGAAATGTATGACCCTGAGAAAGATGTTTGGATTCCAATGCCTGATCTTCATCGCACCCATAATTCAGCCTGTTCAGGAGTGGTGATTGGAGGAAAGGTGCATGTACTGCACAAGGATATGTCAACGGTGCAAGTTTTAGACAATGCAGGTCAGTGGACGGTTGAGGAATATGGGTGGCTCCATGGTCAAATGGCAGTTATCAGGGATGCCCTTTATGTAATAAGCTATGGATTAATCATCAAGCAAGACAAAAAAATGAGGAAGGTTGTAGGTTCAGCTTCCGAGTTTCGAAGGAGAATTGGATTTGCAATGATAGGTTTAGGTGATGAATTATATGTGATTGGAGGTGTCATTGGCCCTGACAGGTGGAATTGGGACATCAAGCCACTGTCTGATGTTGATGTTCTTACACTTGCGAGCGACAGACCGACGTGGCGCCAAGCAGCTCCAATGACACGGTGTGGTGGTACCATTCTTGGTTGTACACTGCTGAGAATTTAG >Glyma02g16480.4 sequence type=CDS gene model=Glyma02g16480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATCAGGTGCCTTGCATGGGTTCCCTTCTACCTCCATCCAAAGTTAGAGCTTGTCTCTCGTGCTTGGCGAGCAGTTGTCCGTGGCCCTGAACTATTTAAAGCTCGACAGGAGCTTGGTTCGTCAGAGGATTTGTTATGTGTCTGTGCTTTTGAACCAGAGAACTTATGGCAGTTGTATGACCCTCTGCGAGATCTCTGGATTACTCTTCCTGTTCTACCCTCAAGAATCAGGCACCTTTCACATTTTGGTGCTGTCTCCACTGCTGGAAAGTTGTTTGTAATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACGGGTGACCAAGATGGTTGTTTTGCAACAAATGAAGTCTGGTCGTATGACCCTGTAGTACGGCAATGGTCCCCCCGTGCAGCAATGCTCGTTCCCCGTTCTATGTTTGCATGCTGTGTTATGAATGGAAAAATAGTTGTGGCCGGGGGCTTCACTAGCTGCAGAAAGTCAATATCTCAAGCAGAAATGTATGACCCTGAGAAAGATGTTTGGATTCCAATGCCTGATCTTCATCGCACCCATAATTCAGCCTGTTCAGGAGTGGTGATTGGAGGAAAGGTGCATGTACTGCACAAGGATATGTCAACGGTGCAAGTTTTAGACAATGCAGGTCAGTGGACGGTTGAGGAATATGGGTGGCTCCATGGTCAAATGGCAGTTATCAGGGATGCCCTTTATGTAATAAGCTATGGATTAATCATCAAGCAAGACAAAAAAATGAGGAAGGTTGTAGGTTCAGCTTCCGAGTTTCGAAGGAGAATTGGATTTGCAATGATAGGTTTAGGTGATGAATTATATGTGATTGGAGGTGTCATTGGCCCTGACAGGTGGAATTGGGACATCAAGCCACTGTCTGATGTTGATGTTCTTACACTTGCGAGCGACAGACCGACGTGGCGCCAAGCAGCTCCAATGACACGGTGTGGTGGTACCATTCTTGGTTGTACACTGCTGAGAATTTAG
>Glyma02g16480.3 sequence type=predicted peptide gene model=Glyma02g16480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGLIEGLPDAVAIRCLAWVPFYLHPKLELVSRAWRAVVRGPELFKARQELGSSEDLLCVCAFEPENLWQLYDPLRDLWITLPVLPSRIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATNEVWSYDPVVRQWSPRAAMLVPRSMFACCVMNGKIVVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGQWTVEEYGWLHGQMAVIRDALYVISYGLIIKQDKKMRKVVGSASEFRRRIGFAMIGLGDELYVIGGVIGPDRWNWDIKPLSDVDVLTLASDRPTWRQAAPMTRCGGTILGCTLLRI* >Glyma02g16480.4 sequence type=predicted peptide gene model=Glyma02g16480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGLIEGLPDAVAIRCLAWVPFYLHPKLELVSRAWRAVVRGPELFKARQELGSSEDLLCVCAFEPENLWQLYDPLRDLWITLPVLPSRIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATNEVWSYDPVVRQWSPRAAMLVPRSMFACCVMNGKIVVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGQWTVEEYGWLHGQMAVIRDALYVISYGLIIKQDKKMRKVVGSASEFRRRIGFAMIGLGDELYVIGGVIGPDRWNWDIKPLSDVDVLTLASDRPTWRQAAPMTRCGGTILGCTLLRI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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