Glyma02g16460 - SoyBase

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Report for Sequence Feature Glyma02g16460

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14858717
stop:	14859013
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G48140	AT	Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \| chr2:19686442-19687157 FORWARD LENGTH=131	SoyBase	E_val: 2.00E-18	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0009561	GO-bp	Annotation by Michelle Graham. GO Biological Process: megagametogenesis	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
UniRef100_G7IDM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Non-specific lipid-transfer protein n=1 Tax=Medicago truncatula RepID=G7IDM6_MEDTR	SoyBase	E_val: 1.00E-22	ISS
UniRef100_I1JF88	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JF88_SOYBN	SoyBase	E_val: 8.00E-48	ISS

Expression Patterns of Glyma02g16460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16460

Paralog	Evidence	Comments
Glyma10g03375	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g145900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g16460

Limit To All Plant Sequences

>Glyma02g16460.2   sequence type=CDS   gene model=Glyma02g16460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACACCTCAGCTCTAATTCAAAAATAACACTGATATTAATATTAGCCCTTACAATATTCACTTCACTACATTTTTTGGTCACGCCCTGCACGACCTCTATAATCAATACTATCACCCCTTGTGCCAACTTCATCACAGGAAGCATCAACAATGGTTTAACTCCATCAGCCACGTGCTGTGATTCACTACTGTCTTTGATAAGCTCTAGTGTGGATTGTGCCTGCCTTCTAGTATCAGCTAATGTTCCATTGCAAATACTCGTTAACAGAGTTCTAAGCAAGCAACGTGGATGA

Predicted protein sequences of Glyma02g16460

Limit To All Plant Sequences

>Glyma02g16460.2   sequence type=predicted peptide   gene model=Glyma02g16460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHLSSNSKITLILILALTIFTSLHFLVTPCTTSIINTITPCANFITGSINNGLTPSATCCDSLLSLISSSVDCACLLVSANVPLQILVNRVLSKQRG*

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