Glyma02g16450 - SoyBase

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Report for Sequence Feature Glyma02g16450

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14854983
stop:	14857931
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23535	AT	Annotation by Michelle Graham. TAIR10: KOW domain-containing protein \| chr5:7935871-7937127 FORWARD LENGTH=159	SoyBase	E_val: 3.00E-94	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR12903	Panther	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	JGI		ISS
PF00467	PFAM	KOW motif	JGI		ISS
UniRef100_B9T402	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial ribosomal protein L24, putative n=1 Tax=Ricinus communis RepID=B9T402_RICCO	SoyBase	E_val: 3.00E-95	ISS
UniRef100_I1JF87	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF87_SOYBN	SoyBase	E_val: 8.00E-109	ISS

Expression Patterns of Glyma02g16450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g16450 not represented in the dataset	Glyma02g16450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g16450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g145800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16450

Limit To All Plant Sequences

>Glyma02g16450.2   sequence type=transcript   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCCAGCTCTACTTGGATCAAATGACCAAACTCCTCCGCCTATTGCCTTTTCTCCTTGAAGCCCACAAGTGTAAGAAGGCCGTTTTCACACCTGGATTGAAGGTTCCTTGGCTTCTTCACACTCACAGCGTGCCACCATCACGCTACACTAAGAGTGCAGGAACATCCTGTATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAAATTCTCAGAGGAGATAATGTTATGATAACAAGGGGCAAAGATAAGGGTGAGACCGGGATTATAAAGCGTGTCATTCGCTCTCAAAATCGTGTCATTGTAGAGAGTAAAAACCTGGTAAAGAAGCATATAAAGCAAGGGCAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGACAGGCAAGCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTCAGAGTGTCCAGAGGAATAGGAACCTCAGGGTCCATAGTCCCTCGTCCTGAGATTTTAAAGATAAGAACTACCCCAAGACCTGCAGTCCTTGGTCCTAAAAATACTCCTATGAATCTTGTGCTAGAGAAGACTTGCAATGCTAAAACAGGACGGGGCATGCCTGAACTTTAAGGAGACGTTGCCTTGTTCCGATTAGGTAATTGCTATCGTGATGAACAAAAATTTGGTGTGAATTTATCTCCTTGCCCTTTGCCATGATTCAATTAAAGACGTGTTTGGAACCACATTCTAACACCACTTTATGATGGGTTAGACGCAAAATCTAGATTGGGTAGTGTTTACACACAGTTACAAACACATTCCTTGTTTAATGTTATCATGCCTAGGAGTTGAATAACTTGTAACTTTACCAATTAGACATTACTACTAGCATTCTTTTTCCTATTCAAGTTGATGTTATCTCCAGTTAGTGATGGTCATTTCATTCCATAAACTTCAATTGTTAAAATGAGTGAAAAGGGAAAAAGGAACCCGTTTGATTGTTATGGTTCTAGTGATTTTTATTAATTGGGTTTGTCCATTAGTGTT

>Glyma02g16450.3   sequence type=transcript   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAAATTATAATTAATAAGTGTAAGAAGGCCGTTTTCACACCTGGATTGAAGGTTCCTTGGCTTCTTCACACTCACAGCGTGCCACCATCACGCTACACTAAGAGTGCAGGAACATCCTGTATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAAATTCTCAGAGGAGATAATGTTATGATAACAAGGGGCAAAGATAAGGGTGAGACCGGGATTATAAAGCGTGTCATTCGCTCTCAAAATCGTGTCATTGTAGAGAGTAAAAACCTGGTAAAGAAGCATATAAAGCAAGGGCAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGACAGGCAAGCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTCAGAGTGTCCAGAGGAATAGGAACCTCAGGGTCCATAGTCCCTCGTCCTGAGATTTTAAAGATAAGAACTACCCCAAGACCTGCAGTCCTTGGTCCTAAAAATACTCCTATGAATCTTGTGCTAGAGAAGACTTGCAATGCTAAAACAGGACGGGGCATGCCTGAACTTTAAGGAGACGTTGCCTTGTTCCGATTAGGTAATTGCTATCGTGATGAACAAAAATTTGGTGTGAATTTATCTCCTTGCCCTTTGCCATGATTCAATTAAAGACGTGTTTGGAACCACATTCTAACACCACTTTATGATGGGTTAGACGCAAAATCTAGATTGGGTAGTGTTTACACACAGTTACAAACACATTCCTTGTTTAATGTTATCATGCCTAGGAGTTGAATAACTTGTAACTTTACCAATTAGACATTACTACTAGCATTCTTTTTCCTATTCAAGTTGATGTTATCTCCAGTTAGTGATGGTCATTTCATTCCATAAACTTCAATTGTTAAAATGAGTGAAAAGGGAAAAAGGAACCCGTTTGATTGTTATGGTTCTAGTGATTTTTATTAATTGGGTTTGTCCATTAGTGTTGATTTGAGCTAAATAG

>Glyma02g16450.4   sequence type=transcript   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAAATTATAATTAATAAGTGTAAGAAGGCCGTTTTCACACCTGGATTGAAGGTTCCTTGGCTTCTTCACACTCACAGCGTGCCACCATCACGCTACACTAAGGTAAAGAAGCATATAAAGCAAGGGCAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGACAGGCAAGCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTCAGAGTGTCCAGAGGAATAGGAACCTCAGGGTCCATAGTCCCTCGTCCTGAGATTTTAAAGATAAGAACTACCCCAAGACCTGCAGTCCTTGGTCCTAAAAATACTCCTATGAATCTTGTGCTAGAGAAGACTTGCAATGCTAAAACAGGACGGGGCATGCCTGAACTTTAAGGAGACGTTGCCTTGTTCCGATTAGGTAATTGCTATCGTGATGAACAAAAATTTGGTGTGAATTTATCTCCTTGCCCTTTGCCATGATTCAATTAAAGACGTGTTTGGAACCACATTCTAACACCACTTTATGATGGGTTAGACGCAAAATCTAGATTGGGTAGTGTTTACACACAGTTACAAACACATTCCTTGTTTAATGTTATCATGCCTAGGAGTTGAATAACTTGTAACTTTACCAATTAGACATTACTACTAGCATTCTTTTTCCTATTCAAGTTGATGTTATCTCCAGTTAGTGATGGTCATTTCATTCCATAAACTTCAATTGTTAAAATGAGTGAAAAGGGAAAAAGGAACCCGTTTGATTGTTATGGTTCTAGTGATTTTTATTAATTGGGTTTGTCCATTAGTGTTGATTTGAGCTAAATAG

Coding sequences of Glyma02g16450

Limit To All Plant Sequences

>Glyma02g16450.1   sequence type=CDS   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAAATTCTCAGAGGAGATAATGTTATGATAACAAGGGGCAAAGATAAGGGTGAGACCGGGATTATAAAGCGTGTCATTCGCTCTCAAAATCGTGTCATTGTAGAGAGTAAAAACCTGGTAAAGAAGCATATAAAGCAAGGGCAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGACAGGCAAGCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTCAGAGTGTCCAGAGGAATAGGAACCTCAGGGTCCATAGTCCCTCGTCCTGAGATTTTAAAGATAAGAACTACCCCAAGACCTGCAGTCCTTGGTCCTAAAAATACTCCTATGAATCTTGTGCTAGAGAAGACTTGCAATGCTAAAACAGGACGGGGCATGCCTGAACTTTAA

>Glyma02g16450.2   sequence type=CDS   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCCAGCTCTACTTGGATCAAATGACCAAACTCCTCCGCCTATTGCCTTTTCTCCTTGAAGCCCACAAGTGTAAGAAGGCCGTTTTCACACCTGGATTGAAGGTTCCTTGGCTTCTTCACACTCACAGCGTGCCACCATCACGCTACACTAAGAGTGCAGGAACATCCTGTATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAAATTCTCAGAGGAGATAATGTTATGATAACAAGGGGCAAAGATAAGGGTGAGACCGGGATTATAAAGCGTGTCATTCGCTCTCAAAATCGTGTCATTGTAGAGAGTAAAAACCTGGTAAAGAAGCATATAAAGCAAGGGCAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGACAGGCAAGCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTCAGAGTGTCCAGAGGAATAGGAACCTCAGGGTCCATAGTCCCTCGTCCTGAGATTTTAAAGATAAGAACTACCCCAAGACCTGCAGTCCTTGGTCCTAAAAATACTCCTATGAATCTTGTGCTAGAGAAGACTTGCAATGCTAAAACAGGACGGGGCATGCCTGAACTTTAA

>Glyma02g16450.3   sequence type=CDS   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAAATTATAATTAATAAGTGTAAGAAGGCCGTTTTCACACCTGGATTGAAGGTTCCTTGGCTTCTTCACACTCACAGCGTGCCACCATCACGCTACACTAAGAGTGCAGGAACATCCTGTATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAAATTCTCAGAGGAGATAATGTTATGATAACAAGGGGCAAAGATAAGGGTGAGACCGGGATTATAAAGCGTGTCATTCGCTCTCAAAATCGTGTCATTGTAGAGAGTAAAAACCTGGTAAAGAAGCATATAAAGCAAGGGCAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGACAGGCAAGCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTCAGAGTGTCCAGAGGAATAGGAACCTCAGGGTCCATAGTCCCTCGTCCTGAGATTTTAAAGATAAGAACTACCCCAAGACCTGCAGTCCTTGGTCCTAAAAATACTCCTATGAATCTTGTGCTAGAGAAGACTTGCAATGCTAAAACAGGACGGGGCATGCCTGAACTTTAA

>Glyma02g16450.4   sequence type=CDS   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAAATTATAATTAATAAGTGTAAGAAGGCCGTTTTCACACCTGGATTGAAGGTTCCTTGGCTTCTTCACACTCACAGCGTGCCACCATCACGCTACACTAAGGTAAAGAAGCATATAAAGCAAGGGCAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGACAGGCAAGCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTCAGAGTGTCCAGAGGAATAGGAACCTCAGGGTCCATAGTCCCTCGTCCTGAGATTTTAAAGATAAGAACTACCCCAAGACCTGCAGTCCTTGGTCCTAAAAATACTCCTATGAATCTTGTGCTAGAGAAGACTTGCAATGCTAAAACAGGACGGGGCATGCCTGAACTTTAA

Predicted protein sequences of Glyma02g16450

Limit To All Plant Sequences

>Glyma02g16450.1   sequence type=predicted peptide   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWKAAEKLIRHWKILRGDNVMITRGKDKGETGIIKRVIRSQNRVIVESKNLVKKHIKQGQGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGTSGSIVPRPEILKIRTTPRPAVLGPKNTPMNLVLEKTCNAKTGRGMPEL*

>Glyma02g16450.2   sequence type=predicted peptide   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AQLYLDQMTKLLRLLPFLLEAHKCKKAVFTPGLKVPWLLHTHSVPPSRYTKSAGTSCMGWKAAEKLIRHWKILRGDNVMITRGKDKGETGIIKRVIRSQNRVIVESKNLVKKHIKQGQGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGTSGSIVPRPEILKIRTTPRPAVLGPKNTPMNLVLEKTCNAKTGRGMPEL*

>Glyma02g16450.3   sequence type=predicted peptide   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IKIIINKCKKAVFTPGLKVPWLLHTHSVPPSRYTKSAGTSCMGWKAAEKLIRHWKILRGDNVMITRGKDKGETGIIKRVIRSQNRVIVESKNLVKKHIKQGQGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGTSGSIVPRPEILKIRTTPRPAVLGPKNTPMNLVLEKTCNAKTGRGMPEL*

>Glyma02g16450.4   sequence type=predicted peptide   gene model=Glyma02g16450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IKIIINKCKKAVFTPGLKVPWLLHTHSVPPSRYTKVKKHIKQGQGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGTSGSIVPRPEILKIRTTPRPAVLGPKNTPMNLVLEKTCNAKTGRGMPEL*

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